Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 AC239809.2-201ENST00000415381 517 ntBASIC18.24■□□□□ 0.51
SLC28A1O00337 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SLC28A1O00337 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.24■□□□□ 0.51
SLC28A1O00337 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.24■□□□□ 0.51
SLC28A1O00337 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.24■□□□□ 0.51
SLC28A1O00337 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
SLC28A1O00337 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.24■□□□□ 0.51
SLC28A1O00337 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.24■□□□□ 0.51
SLC28A1O00337 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SLC28A1O00337 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SLC28A1O00337 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.24■□□□□ 0.51
SLC28A1O00337 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.23■□□□□ 0.51
SLC28A1O00337 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SLC28A1O00337 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.23■□□□□ 0.51
SLC28A1O00337 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SLC28A1O00337 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.23■□□□□ 0.51
SLC28A1O00337 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 AC233263.1-201ENST00000578059 224 ntBASIC18.23■□□□□ 0.51
SLC28A1O00337 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 AC090340.1-201ENST00000620778 4980 ntBASIC18.23■□□□□ 0.51
SLC28A1O00337 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SLC28A1O00337 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.23■□□□□ 0.51
SLC28A1O00337 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SLC28A1O00337 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SLC28A1O00337 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC28A1O00337 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC28A1O00337 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC28A1O00337 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC28A1O00337 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
SLC28A1O00337 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.22■□□□□ 0.51
SLC28A1O00337 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.22■□□□□ 0.51
SLC28A1O00337 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.22■□□□□ 0.51
SLC28A1O00337 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SLC28A1O00337 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.21■□□□□ 0.51
SLC28A1O00337 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SLC28A1O00337 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SLC28A1O00337 ID1-201ENST00000376105 1233 ntBASIC18.21■□□□□ 0.51
SLC28A1O00337 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SLC28A1O00337 Z85996.1-201ENST00000494644 937 ntBASIC18.21■□□□□ 0.51
SLC28A1O00337 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.21■□□□□ 0.51
SLC28A1O00337 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
SLC28A1O00337 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.21■□□□□ 0.51
SLC28A1O00337 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.21■□□□□ 0.51
SLC28A1O00337 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms