Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 AL031133.1-201ENST00000406807 723 ntBASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 AL359075.1-203ENST00000462729 1002 ntBASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 RCC2P3-201ENST00000418112 1537 ntBASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMIM28A0A1B0GU29 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 AL109659.2-201ENST00000606809 1674 ntBASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 KRT18P38-201ENST00000449496 1282 ntBASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMIM28A0A1B0GU29 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 KRT8P32-201ENST00000512863 1461 ntBASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 AC008556.1-201ENST00000610908 2040 ntBASIC20.29■□□□□ 0.84
SMIM28A0A1B0GU29 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SMIM28A0A1B0GU29 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms