Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU1-105P-201ENST00000363470 161 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-32P-201ENST00000383948 107 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-1323P-201ENST00000384025 107 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-13P-201ENST00000384248 107 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-12P-201ENST00000384604 107 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-41P-201ENST00000384741 107 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 MIR29B2-201ENST00000385055 81 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 MIR767-201ENST00000390228 109 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RPS26P8-201ENST00000393490 348 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AL138878.1-201ENST00000405131 347 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RN7SKP101-201ENST00000411376 320 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AL159169.1-201ENST00000421119 127 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AC004975.1-201ENST00000428733 208 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 Z98742.2-201ENST00000431564 187 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RN7SL93P-201ENST00000463035 293 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-1098P-201ENST00000516772 96 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AC020914.4-201ENST00000597690 277 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AC005972.2-201ENST00000604690 348 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 AC004832.5-201ENST00000608677 401 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 snoZ196.1-201ENST00000625269 89 ntBASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
HIF3AQ9Y2N7 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RNU1-18P-201ENST00000363062 164 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-309P-201ENST00000364573 106 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 SNORD18B-201ENST00000365659 72 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 AL031737.1-201ENST00000450125 223 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RNU7-170P-201ENST00000459303 61 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RPS26P55-201ENST00000471178 356 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 AC026402.1-201ENST00000513642 170 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 MIR449C-201ENST00000516047 92 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-1299P-201ENST00000516316 100 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 Y_RNA.694-201ENST00000516677 117 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RNU2-60P-201ENST00000517290 128 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 MIR1254-2-201ENST00000579553 63 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 AC131055.1-201ENST00000584626 316 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 AL137849.1-201ENST00000604767 169 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 MIR6867-201ENST00000610636 67 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 FAM35DP-201ENST00000323387 2712 ntBASIC3.47□□□□□ -1.85
HIF3AQ9Y2N7 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
HIF3AQ9Y2N7 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 SNORA27.1-201ENST00000362604 124 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 Y_RNA.91-201ENST00000363042 107 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 Y_RNA.116-201ENST00000363292 103 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 DYNLT3P1-201ENST00000378574 347 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 RPL21P65-201ENST00000406094 466 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 AL353705.1-201ENST00000433468 480 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 Y_RNA.649-201ENST00000459077 103 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 RPS26P45-201ENST00000471748 340 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 TRBV12-2-201ENST00000489763 344 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 RN7SKP209-201ENST00000516888 304 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 RNU7-116P-201ENST00000516940 62 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 AC074050.1-201ENST00000563247 211 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 AC006504.1-201ENST00000562493 3666 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 AP003122.5-201ENST00000527668 3766 ntBASIC3.46□□□□□ -1.86
HIF3AQ9Y2N7 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 AC103988.1-201ENST00000566382 2177 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 AL159152.1-201ENST00000635019 2587 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP97-201ENST00000365006 84 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 RNU6-880P-201ENST00000384526 107 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 SNORA70C-201ENST00000384538 135 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 MIR181A2-201ENST00000384863 110 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 RNA5SP496-201ENST00000391240 109 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 MIR300-201ENST00000401138 83 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 RN7SKP27-201ENST00000410684 333 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 RNU2-70P-201ENST00000410718 179 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 RNU7-57P-201ENST00000459540 60 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 Y_RNA.677-201ENST00000516401 85 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 SNORD59.2-201ENST00000516873 68 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 AL021707.8-201ENST00000609428 183 ntBASIC3.45□□□□□ -1.86
HIF3AQ9Y2N7 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms