Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 MIR423-201ENST00000362201 94 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 RNU6-1290P-201ENST00000362957 109 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 Y_RNA.81-201ENST00000362997 102 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 MIR1193-201ENST00000408109 78 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 RNU6-735P-201ENST00000410612 107 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 AC004866.1-201ENST00000411748 78 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 RNU6-426P-201ENST00000516464 97 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 RNA5SP164-201ENST00000516533 110 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 RNA5SP143-201ENST00000516936 115 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 AP000867.2-201ENST00000532468 320 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 TOMM20P2-201ENST00000540082 421 ntBASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.57□□□□□ -1.84
UBE3DQ7Z6J8 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 SNORD87-201ENST00000364849 89 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 SNORA18.2-201ENST00000383865 132 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 SNORA67.2-201ENST00000384300 149 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 SNORA40-201ENST00000388090 126 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 RNU2-49P-201ENST00000410666 184 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 RHEBP3-201ENST00000411920 351 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 RPL30P13-201ENST00000418873 348 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 AL139281.1-201ENST00000422120 335 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 AL135790.2-201ENST00000437701 267 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 RN7SL93P-201ENST00000463035 293 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 RNU2-44P-201ENST00000516795 194 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 DEFB131C-201ENST00000528817 165 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 MIR5685-201ENST00000579080 79 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 DNAJC19P2-201ENST00000593340 302 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 AC006133.1-201ENST00000617106 264 ntBASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.56□□□□□ -1.84
UBE3DQ7Z6J8 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 SNORA22C-201ENST00000384614 134 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 U8.11-201ENST00000384699 133 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 MIR616-201ENST00000385293 97 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 RNA5SP424-201ENST00000390988 115 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AL133475.1-201ENST00000404414 305 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 RNU6-257P-201ENST00000410238 98 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 RN7SKP156-201ENST00000410308 342 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 NDUFB1P1-201ENST00000435191 180 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 U8.18-201ENST00000459285 133 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AC146507.2-201ENST00000460608 476 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AL133162.1-201ENST00000463228 453 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AC079598.5-201ENST00000547460 117 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 U6.115-201ENST00000636045 103 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AP003122.5-201ENST00000527668 3766 ntBASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.55□□□□□ -1.84
UBE3DQ7Z6J8 AC010332.2-201ENST00000613083 1904 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 RNU1-18P-201ENST00000363062 164 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 RNU6-144P-201ENST00000383951 107 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 MIR586-201ENST00000385035 97 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 SNORA57.1-201ENST00000391227 145 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 RNU6-855P-201ENST00000410395 104 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 RN7SKP209-201ENST00000516888 304 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 RNU1-117P-201ENST00000517041 158 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 AC109810.1-201ENST00000534066 224 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 AC008011.1-201ENST00000545989 227 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 AL137843.1-201ENST00000605078 385 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 AL391261.4-201ENST00000616012 481 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.54□□□□□ -1.84
UBE3DQ7Z6J8 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 215.5 ms