Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 CA15P1-201ENST00000481698 905 ntBASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 AL512604.3-201ENST00000569583 964 ntBASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 AC004408.2-201ENST00000623613 2777 ntBASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
PCDHGA3Q9Y5H0 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 AL160286.2-201ENST00000567150 934 ntBASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 AC139887.4-201ENST00000607877 719 ntBASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 AC091076.1-201ENST00000610741 619 ntBASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 MYC-208ENST00000641036 567 ntBASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PCDHGA3Q9Y5H0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDHGA3Q9Y5H0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
PCDHGA3Q9Y5H0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDHGA3Q9Y5H0 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PCDHGA3Q9Y5H0 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
PCDHGA3Q9Y5H0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 COX11P1-201ENST00000489116 835 ntBASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHGA3Q9Y5H0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHGA3Q9Y5H0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms