Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 AP002383.4-201ENST00000442518 975 ntBASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMD1Q9UGP4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 GABARAPL3-202ENST00000624044 1851 ntBASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIMD1Q9UGP4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 AC009078.2-202ENST00000463353 338 ntBASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 AP002414.4-201ENST00000589764 1148 ntBASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIMD1Q9UGP4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 NUS1P1-201ENST00000446295 882 ntBASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 EMBP1-201ENST00000458200 901 ntBASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 AC073314.1-201ENST00000568729 2216 ntBASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 AP005212.1-201ENST00000581547 1997 ntBASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIMD1Q9UGP4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LIMD1Q9UGP4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms