Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
USP42Q9H9J4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 FAAHP1-202ENST00000446499 1238 ntBASIC24.1■■□□□ 1.45
USP42Q9H9J4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC24.1■■□□□ 1.45
USP42Q9H9J4 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 GPAT2P1-201ENST00000444924 1672 ntBASIC24.09■■□□□ 1.45
USP42Q9H9J4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
USP42Q9H9J4 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC24.09■■□□□ 1.45
USP42Q9H9J4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC24.08■■□□□ 1.45
USP42Q9H9J4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC24.08■■□□□ 1.45
USP42Q9H9J4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC24.08■■□□□ 1.45
USP42Q9H9J4 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC24.08■■□□□ 1.45
USP42Q9H9J4 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC24.08■■□□□ 1.45
USP42Q9H9J4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
USP42Q9H9J4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP42Q9H9J4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP42Q9H9J4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
USP42Q9H9J4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC24.08■■□□□ 1.44
USP42Q9H9J4 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC24.08■■□□□ 1.44
USP42Q9H9J4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC24.08■■□□□ 1.44
USP42Q9H9J4 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC24.08■■□□□ 1.44
USP42Q9H9J4 AC024243.1-201ENST00000609234 778 ntBASIC24.08■■□□□ 1.44
USP42Q9H9J4 AC104417.2-201ENST00000562989 1793 ntBASIC24.07■■□□□ 1.44
USP42Q9H9J4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 AP002414.4-201ENST00000589764 1148 ntBASIC24.07■■□□□ 1.44
USP42Q9H9J4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
USP42Q9H9J4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC24.07■■□□□ 1.44
USP42Q9H9J4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
USP42Q9H9J4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC24.06■■□□□ 1.44
USP42Q9H9J4 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 AC036111.1-201ENST00000533973 1582 ntBASIC24.05■■□□□ 1.44
USP42Q9H9J4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
USP42Q9H9J4 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC24.05■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms