Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 AP002383.4-201ENST00000442518 975 ntBASIC19.29■□□□□ 0.68
CHFRQ96EP1 AC034232.1-201ENST00000506026 1064 ntBASIC19.29■□□□□ 0.68
CHFRQ96EP1 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 AC016734.2-201ENST00000624325 1377 ntBASIC19.29■□□□□ 0.68
CHFRQ96EP1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHFRQ96EP1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.29■□□□□ 0.68
CHFRQ96EP1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 KRT8P3-201ENST00000519669 1449 ntBASIC19.28■□□□□ 0.68
CHFRQ96EP1 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 MIR3180-5-201ENST00000583743 153 ntBASIC19.28■□□□□ 0.68
CHFRQ96EP1 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHFRQ96EP1 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.28■□□□□ 0.68
CHFRQ96EP1 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 PWWP2AP1-201ENST00000429776 2273 ntBASIC19.27■□□□□ 0.68
CHFRQ96EP1 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 AC011498.5-201ENST00000592027 486 ntBASIC19.27■□□□□ 0.68
CHFRQ96EP1 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.27■□□□□ 0.68
CHFRQ96EP1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHFRQ96EP1 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHFRQ96EP1 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.27■□□□□ 0.67
CHFRQ96EP1 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHFRQ96EP1 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CHFRQ96EP1 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.27■□□□□ 0.67
CHFRQ96EP1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.27■□□□□ 0.67
CHFRQ96EP1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.27■□□□□ 0.67
CHFRQ96EP1 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.27■□□□□ 0.67
CHFRQ96EP1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms