Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 AC117947.1-201ENST00000427448 529 ntBASIC17.59■□□□□ 0.41
BEST3Q8N1M1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 AP003041.3-201ENST00000527151 707 ntBASIC17.59■□□□□ 0.41
BEST3Q8N1M1 WWOX-216ENST00000569818 525 ntBASIC17.59■□□□□ 0.41
BEST3Q8N1M1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
BEST3Q8N1M1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
BEST3Q8N1M1 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 AC139887.4-201ENST00000607877 719 ntBASIC17.58■□□□□ 0.4
BEST3Q8N1M1 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.58■□□□□ 0.4
BEST3Q8N1M1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 AC141257.4-201ENST00000634557 245 ntBASIC17.57■□□□□ 0.4
BEST3Q8N1M1 AC136944.6-201ENST00000634818 245 ntBASIC17.57■□□□□ 0.4
BEST3Q8N1M1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
BEST3Q8N1M1 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
BEST3Q8N1M1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms