Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC13.19□□□□□ -0.3
CSMD3Q7Z407 BAALC-202ENST00000306391 243 ntTSL 5 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 BAALC-204ENST00000330955 222 ntTSL 5 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 AL590627.1-203ENST00000421194 1026 ntBASIC13.18□□□□□ -0.3
CSMD3Q7Z407 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 SDHAP1-207ENST00000440850 2000 ntBASIC13.18□□□□□ -0.3
CSMD3Q7Z407 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 ABBA01031661.1-201ENST00000634362 1253 ntBASIC13.18□□□□□ -0.3
CSMD3Q7Z407 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC13.18□□□□□ -0.3
CSMD3Q7Z407 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 BX842568.4-201ENST00000421222 227 ntBASIC13.17□□□□□ -0.3
CSMD3Q7Z407 IGHV3-47-201ENST00000425060 335 ntBASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AC074051.2-201ENST00000565115 352 ntBASIC13.17□□□□□ -0.3
CSMD3Q7Z407 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 GAD2-202ENST00000376248 680 ntTSL 5 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CSMD3Q7Z407 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 NME1-207ENST00000480143 964 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CSMD3Q7Z407 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms