Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
KRT39Q6A163 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.49■□□□□ 0.87
KRT39Q6A163 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.49■□□□□ 0.87
KRT39Q6A163 AC097488.1-201ENST00000507834 756 ntBASIC20.49■□□□□ 0.87
KRT39Q6A163 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.49■□□□□ 0.87
KRT39Q6A163 SLC25A1P4-201ENST00000567977 778 ntBASIC20.49■□□□□ 0.87
KRT39Q6A163 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
KRT39Q6A163 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
KRT39Q6A163 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
KRT39Q6A163 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
KRT39Q6A163 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 KRT8P3-201ENST00000519669 1449 ntBASIC20.48■□□□□ 0.87
KRT39Q6A163 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 MIR4497-201ENST00000583208 89 ntBASIC20.48■□□□□ 0.87
KRT39Q6A163 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
KRT39Q6A163 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.48■□□□□ 0.87
KRT39Q6A163 CROCCP3-202ENST00000420820 1947 ntBASIC20.48■□□□□ 0.87
KRT39Q6A163 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 KRT17P2-201ENST00000300992 1314 ntBASIC20.48■□□□□ 0.87
KRT39Q6A163 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.48■□□□□ 0.87
KRT39Q6A163 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
KRT39Q6A163 AC093503.3-201ENST00000624917 2352 ntBASIC20.48■□□□□ 0.87
KRT39Q6A163 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
KRT39Q6A163 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.47■□□□□ 0.87
KRT39Q6A163 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.47■□□□□ 0.87
KRT39Q6A163 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.47■□□□□ 0.87
KRT39Q6A163 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 MFAP1P1-201ENST00000442257 1255 ntBASIC20.47■□□□□ 0.87
KRT39Q6A163 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.47■□□□□ 0.87
KRT39Q6A163 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.47■□□□□ 0.87
KRT39Q6A163 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.47■□□□□ 0.87
KRT39Q6A163 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.47■□□□□ 0.87
KRT39Q6A163 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.47■□□□□ 0.87
KRT39Q6A163 AC083906.6-201ENST00000641366 219 ntBASIC20.47■□□□□ 0.87
KRT39Q6A163 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.47■□□□□ 0.87
KRT39Q6A163 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.47■□□□□ 0.87
KRT39Q6A163 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
KRT39Q6A163 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
KRT39Q6A163 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
KRT39Q6A163 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
KRT39Q6A163 UNC93B2-201ENST00000285383 730 ntBASIC20.46■□□□□ 0.87
KRT39Q6A163 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.46■□□□□ 0.87
KRT39Q6A163 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 RBM17P1-201ENST00000453646 1190 ntBASIC20.46■□□□□ 0.87
KRT39Q6A163 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.46■□□□□ 0.87
KRT39Q6A163 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.46■□□□□ 0.87
KRT39Q6A163 AC004408.2-201ENST00000623613 2777 ntBASIC20.46■□□□□ 0.87
KRT39Q6A163 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
KRT39Q6A163 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
KRT39Q6A163 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.46■□□□□ 0.87
KRT39Q6A163 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
KRT39Q6A163 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms