Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
HDAC4P56524 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
HDAC4P56524 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
HDAC4P56524 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.82■□□□□ 0.76
HDAC4P56524 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC4P56524 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.82■□□□□ 0.76
HDAC4P56524 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HDAC4P56524 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.82■□□□□ 0.76
HDAC4P56524 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.82■□□□□ 0.76
HDAC4P56524 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
HDAC4P56524 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.81■□□□□ 0.76
HDAC4P56524 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.81■□□□□ 0.76
HDAC4P56524 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HDAC4P56524 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.81■□□□□ 0.76
HDAC4P56524 AL355355.2-201ENST00000442321 338 ntBASIC19.81■□□□□ 0.76
HDAC4P56524 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 SNORA78-201ENST00000459373 127 ntBASIC19.81■□□□□ 0.76
HDAC4P56524 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.81■□□□□ 0.76
HDAC4P56524 AP003071.4-201ENST00000562276 1284 ntBASIC19.81■□□□□ 0.76
HDAC4P56524 CKBP1-201ENST00000565489 1086 ntBASIC19.81■□□□□ 0.76
HDAC4P56524 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.81■□□□□ 0.76
HDAC4P56524 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HDAC4P56524 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
HDAC4P56524 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.81■□□□□ 0.76
HDAC4P56524 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HDAC4P56524 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HDAC4P56524 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
HDAC4P56524 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.8■□□□□ 0.76
HDAC4P56524 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HDAC4P56524 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
HDAC4P56524 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.8■□□□□ 0.76
HDAC4P56524 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
HDAC4P56524 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.8■□□□□ 0.76
HDAC4P56524 DGCR10-201ENST00000609839 495 ntBASIC19.8■□□□□ 0.76
HDAC4P56524 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.8■□□□□ 0.76
HDAC4P56524 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.8■□□□□ 0.76
HDAC4P56524 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.8■□□□□ 0.76
HDAC4P56524 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HDAC4P56524 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.79■□□□□ 0.76
HDAC4P56524 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.79■□□□□ 0.76
HDAC4P56524 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HDAC4P56524 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HDAC4P56524 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.79■□□□□ 0.76
HDAC4P56524 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.79■□□□□ 0.76
HDAC4P56524 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.79■□□□□ 0.76
HDAC4P56524 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.79■□□□□ 0.76
HDAC4P56524 AC066615.1-201ENST00000640911 628 ntBASIC19.79■□□□□ 0.76
HDAC4P56524 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 AC096733.2-201ENST00000609937 1394 ntBASIC19.79■□□□□ 0.76
HDAC4P56524 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HDAC4P56524 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.78■□□□□ 0.76
HDAC4P56524 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.78■□□□□ 0.76
HDAC4P56524 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
HDAC4P56524 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
HDAC4P56524 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms