Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.94■■□□□ 1.42
COL5A3P25940 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC23.94■■□□□ 1.42
COL5A3P25940 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.94■■□□□ 1.42
COL5A3P25940 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC23.94■■□□□ 1.42
COL5A3P25940 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.94■■□□□ 1.42
COL5A3P25940 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC23.94■■□□□ 1.42
COL5A3P25940 LBX2-AS1-202ENST00000603175 2083 ntBASIC23.94■■□□□ 1.42
COL5A3P25940 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL5A3P25940 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
COL5A3P25940 AL109659.2-201ENST00000606809 1674 ntBASIC23.93■■□□□ 1.42
COL5A3P25940 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 KATNBL1P6-202ENST00000562413 1466 ntBASIC23.93■■□□□ 1.42
COL5A3P25940 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.93■■□□□ 1.42
COL5A3P25940 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC23.93■■□□□ 1.42
COL5A3P25940 NAT14-202ENST00000587400 416 ntTSL 5 BASIC23.93■■□□□ 1.42
COL5A3P25940 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
COL5A3P25940 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC23.93■■□□□ 1.42
COL5A3P25940 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 CDV3-207ENST00000508481 661 ntTSL 3 BASIC23.93■■□□□ 1.42
COL5A3P25940 RNA5SP419-201ENST00000515908 135 ntBASIC23.93■■□□□ 1.42
COL5A3P25940 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC23.93■■□□□ 1.42
COL5A3P25940 ABR-204ENST00000543210 1049 ntTSL 2 BASIC23.93■■□□□ 1.42
COL5A3P25940 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL5A3P25940 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL5A3P25940 HLA-A-201ENST00000376802 1334 ntBASIC23.92■■□□□ 1.42
COL5A3P25940 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL5A3P25940 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL5A3P25940 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.92■■□□□ 1.42
COL5A3P25940 AC099336.1-202ENST00000602961 463 ntBASIC23.92■■□□□ 1.42
COL5A3P25940 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL5A3P25940 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.92■■□□□ 1.42
COL5A3P25940 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.92■■□□□ 1.42
COL5A3P25940 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.92■■□□□ 1.42
COL5A3P25940 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.92■■□□□ 1.42
COL5A3P25940 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL5A3P25940 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL5A3P25940 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
COL5A3P25940 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
COL5A3P25940 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
COL5A3P25940 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
COL5A3P25940 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL5A3P25940 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.91■■□□□ 1.42
COL5A3P25940 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL5A3P25940 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL5A3P25940 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
COL5A3P25940 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.9■■□□□ 1.42
COL5A3P25940 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.9■■□□□ 1.42
COL5A3P25940 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.9■■□□□ 1.42
COL5A3P25940 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL5A3P25940 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL5A3P25940 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL5A3P25940 KRT8P7-201ENST00000533003 1432 ntBASIC23.9■■□□□ 1.42
COL5A3P25940 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC23.9■■□□□ 1.42
COL5A3P25940 AC092667.1-201ENST00000434301 2586 ntBASIC23.9■■□□□ 1.42
COL5A3P25940 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL5A3P25940 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC23.9■■□□□ 1.42
COL5A3P25940 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.9■■□□□ 1.42
COL5A3P25940 AP005901.3-202ENST00000581653 237 ntBASIC23.9■■□□□ 1.42
COL5A3P25940 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
COL5A3P25940 AL121912.1-201ENST00000603683 238 ntBASIC23.9■■□□□ 1.42
COL5A3P25940 AL121772.3-201ENST00000610840 674 ntBASIC23.9■■□□□ 1.42
COL5A3P25940 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.9■■□□□ 1.42
COL5A3P25940 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC23.89■■□□□ 1.42
COL5A3P25940 AC008556.1-201ENST00000610908 2040 ntBASIC23.89■■□□□ 1.42
COL5A3P25940 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
COL5A3P25940 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL5A3P25940 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL5A3P25940 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.89■■□□□ 1.41
COL5A3P25940 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC23.89■■□□□ 1.41
COL5A3P25940 REXO1L6P-202ENST00000619970 1078 ntBASIC23.89■■□□□ 1.41
COL5A3P25940 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL5A3P25940 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.89■■□□□ 1.41
COL5A3P25940 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.89■■□□□ 1.41
COL5A3P25940 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC23.89■■□□□ 1.41
COL5A3P25940 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
COL5A3P25940 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC23.89■■□□□ 1.41
COL5A3P25940 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL5A3P25940 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
COL5A3P25940 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.88■■□□□ 1.41
COL5A3P25940 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
COL5A3P25940 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.88■■□□□ 1.41
COL5A3P25940 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms