Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USF1P22415 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
USF1P22415 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
USF1P22415 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USF1P22415 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.06■□□□□ 0.16
USF1P22415 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
USF1P22415 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.06■□□□□ 0.16
USF1P22415 AL691432.2-201ENST00000607222 2038 ntBASIC16.06■□□□□ 0.16
USF1P22415 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.06■□□□□ 0.16
USF1P22415 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC16.05■□□□□ 0.16
USF1P22415 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.05■□□□□ 0.16
USF1P22415 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.05■□□□□ 0.16
USF1P22415 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 AP000550.4-202ENST00000639755 178 ntBASIC16.05■□□□□ 0.16
USF1P22415 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.05■□□□□ 0.16
USF1P22415 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
USF1P22415 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
USF1P22415 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.04■□□□□ 0.16
USF1P22415 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.04■□□□□ 0.16
USF1P22415 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 CKBP1-201ENST00000565489 1086 ntBASIC16.04■□□□□ 0.16
USF1P22415 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
USF1P22415 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
USF1P22415 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.04■□□□□ 0.16
USF1P22415 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
USF1P22415 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC16.04■□□□□ 0.16
USF1P22415 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.04■□□□□ 0.16
USF1P22415 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
USF1P22415 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.04■□□□□ 0.16
USF1P22415 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.03■□□□□ 0.16
USF1P22415 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.03■□□□□ 0.16
USF1P22415 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
USF1P22415 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
USF1P22415 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms