Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 AC112907.2-201ENST00000448639 330 ntBASIC21.93■■□□□ 1.1
ERCC3P19447 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.93■■□□□ 1.1
ERCC3P19447 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.93■■□□□ 1.1
ERCC3P19447 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC3P19447 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.93■■□□□ 1.1
ERCC3P19447 NEK4P2-201ENST00000580004 1012 ntBASIC21.93■■□□□ 1.1
ERCC3P19447 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.93■■□□□ 1.1
ERCC3P19447 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
ERCC3P19447 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.93■■□□□ 1.1
ERCC3P19447 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
ERCC3P19447 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.92■■□□□ 1.1
ERCC3P19447 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC3P19447 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.92■■□□□ 1.1
ERCC3P19447 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
ERCC3P19447 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
ERCC3P19447 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.92■■□□□ 1.1
ERCC3P19447 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.92■■□□□ 1.1
ERCC3P19447 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.92■■□□□ 1.1
ERCC3P19447 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.92■■□□□ 1.1
ERCC3P19447 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.92■■□□□ 1.1
ERCC3P19447 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.92■■□□□ 1.1
ERCC3P19447 KRT126P-201ENST00000549467 1181 ntBASIC21.92■■□□□ 1.1
ERCC3P19447 GCSHP2-201ENST00000560971 527 ntBASIC21.92■■□□□ 1.1
ERCC3P19447 MIR4674-201ENST00000582457 87 ntBASIC21.92■■□□□ 1.1
ERCC3P19447 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
ERCC3P19447 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.91■■□□□ 1.1
ERCC3P19447 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
ERCC3P19447 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC3P19447 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC3P19447 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
ERCC3P19447 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC3P19447 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.91■■□□□ 1.1
ERCC3P19447 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.91■■□□□ 1.1
ERCC3P19447 AL136038.3-201ENST00000561909 1096 ntBASIC21.91■■□□□ 1.1
ERCC3P19447 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.91■■□□□ 1.1
ERCC3P19447 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.91■■□□□ 1.1
ERCC3P19447 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
ERCC3P19447 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.91■■□□□ 1.1
ERCC3P19447 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
ERCC3P19447 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC3P19447 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
ERCC3P19447 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
ERCC3P19447 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 AC104417.2-201ENST00000562989 1793 ntBASIC21.9■■□□□ 1.1
ERCC3P19447 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC3P19447 KRT18P48-201ENST00000434763 852 ntBASIC21.9■■□□□ 1.1
ERCC3P19447 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.9■■□□□ 1.1
ERCC3P19447 VENTXP5-201ENST00000523979 775 ntBASIC21.9■■□□□ 1.1
ERCC3P19447 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.9■■□□□ 1.1
ERCC3P19447 AL121894.2-201ENST00000602977 491 ntBASIC21.9■■□□□ 1.1
ERCC3P19447 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC21.9■■□□□ 1.1
ERCC3P19447 AC083849.1-201ENST00000615227 514 ntBASIC21.9■■□□□ 1.1
ERCC3P19447 HYMAI.1-201ENST00000620949 238 ntBASIC21.9■■□□□ 1.1
ERCC3P19447 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.9■■□□□ 1.1
ERCC3P19447 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
ERCC3P19447 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
ERCC3P19447 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms