Protein–RNA interactions for Protein: P13569

CFTR, Cystic fibrosis transmembrane conductance regulator, humanhuman

Predictions only

Length 1,480 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFTRP13569 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
CFTRP13569 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CFTRP13569 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
CFTRP13569 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
CFTRP13569 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
CFTRP13569 STK25-234ENST00000535007 2459 ntTSL 2 BASIC32.56■■■□□ 2.8
CFTRP13569 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC32.56■■■□□ 2.8
CFTRP13569 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CFTRP13569 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC32.55■■■□□ 2.8
CFTRP13569 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CFTRP13569 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC32.55■■■□□ 2.8
CFTRP13569 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC32.55■■■□□ 2.8
CFTRP13569 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC32.55■■■□□ 2.8
CFTRP13569 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
CFTRP13569 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC32.55■■■□□ 2.8
CFTRP13569 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CFTRP13569 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
CFTRP13569 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC32.55■■■□□ 2.8
CFTRP13569 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CFTRP13569 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CFTRP13569 AC092183.1-201ENST00000469884 875 ntBASIC32.54■■■□□ 2.8
CFTRP13569 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC32.54■■■□□ 2.8
CFTRP13569 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
CFTRP13569 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC32.54■■■□□ 2.8
CFTRP13569 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CFTRP13569 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC32.54■■■□□ 2.8
CFTRP13569 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
CFTRP13569 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC32.54■■■□□ 2.8
CFTRP13569 ABR-217ENST00000572441 563 ntTSL 4 BASIC32.54■■■□□ 2.8
CFTRP13569 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC32.54■■■□□ 2.8
CFTRP13569 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC32.54■■■□□ 2.8
CFTRP13569 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC32.53■■■□□ 2.8
CFTRP13569 AC243591.1-201ENST00000452967 1364 ntBASIC32.53■■■□□ 2.8
CFTRP13569 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
CFTRP13569 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CFTRP13569 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC32.53■■■□□ 2.8
CFTRP13569 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CFTRP13569 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC32.53■■■□□ 2.8
CFTRP13569 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC32.53■■■□□ 2.8
CFTRP13569 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
CFTRP13569 KRT18P67-201ENST00000432816 1264 ntBASIC32.53■■■□□ 2.8
CFTRP13569 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC32.53■■■□□ 2.8
CFTRP13569 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC32.53■■■□□ 2.8
CFTRP13569 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
CFTRP13569 AC073314.1-201ENST00000568729 2216 ntBASIC32.52■■■□□ 2.8
CFTRP13569 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC32.52■■■□□ 2.8
CFTRP13569 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CFTRP13569 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CFTRP13569 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CFTRP13569 AC018712.1-201ENST00000455767 687 ntBASIC32.52■■■□□ 2.8
CFTRP13569 KRT18P58-201ENST00000527480 1120 ntBASIC32.52■■■□□ 2.8
CFTRP13569 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC32.52■■■□□ 2.8
CFTRP13569 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC32.52■■■□□ 2.8
CFTRP13569 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC32.52■■■□□ 2.8
CFTRP13569 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC32.52■■■□□ 2.8
CFTRP13569 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC32.52■■■□□ 2.8
CFTRP13569 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
CFTRP13569 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC32.52■■■□□ 2.8
CFTRP13569 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
CFTRP13569 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
CFTRP13569 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.8
CFTRP13569 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC32.51■■■□□ 2.8
CFTRP13569 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
CFTRP13569 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC32.51■■■□□ 2.79
CFTRP13569 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.79
CFTRP13569 NUS1P2-201ENST00000417358 873 ntBASIC32.51■■■□□ 2.79
CFTRP13569 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC32.51■■■□□ 2.79
CFTRP13569 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC32.51■■■□□ 2.79
CFTRP13569 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC32.51■■■□□ 2.79
CFTRP13569 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.79
CFTRP13569 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC32.51■■■□□ 2.79
CFTRP13569 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC32.51■■■□□ 2.79
CFTRP13569 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CFTRP13569 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CFTRP13569 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CFTRP13569 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC32.5■■■□□ 2.79
CFTRP13569 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
CFTRP13569 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CFTRP13569 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
CFTRP13569 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
CFTRP13569 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC32.49■■■□□ 2.79
CFTRP13569 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC32.49■■■□□ 2.79
CFTRP13569 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CFTRP13569 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC32.49■■■□□ 2.79
CFTRP13569 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
CFTRP13569 AC064862.7-201ENST00000604520 867 ntBASIC32.49■■■□□ 2.79
CFTRP13569 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC32.49■■■□□ 2.79
CFTRP13569 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC32.49■■■□□ 2.79
CFTRP13569 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC32.49■■■□□ 2.79
CFTRP13569 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC32.49■■■□□ 2.79
CFTRP13569 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CFTRP13569 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC32.48■■■□□ 2.79
CFTRP13569 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC32.48■■■□□ 2.79
CFTRP13569 IGHV3-41-201ENST00000613121 348 ntBASIC32.48■■■□□ 2.79
CFTRP13569 AC148477.8-201ENST00000624298 468 ntBASIC32.48■■■□□ 2.79
CFTRP13569 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC32.48■■■□□ 2.79
CFTRP13569 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CFTRP13569 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CFTRP13569 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
CFTRP13569 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC32.48■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms