Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.85■□□□□ 0.29
CNOT4O95628 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.85■□□□□ 0.29
CNOT4O95628 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.85■□□□□ 0.29
CNOT4O95628 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.85■□□□□ 0.29
CNOT4O95628 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.85■□□□□ 0.29
CNOT4O95628 AC010947.1-201ENST00000623454 693 ntBASIC16.85■□□□□ 0.29
CNOT4O95628 AC116562.4-202ENST00000641738 218 ntBASIC16.85■□□□□ 0.29
CNOT4O95628 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CNOT4O95628 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
CNOT4O95628 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CNOT4O95628 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.85■□□□□ 0.29
CNOT4O95628 LINC01568-207ENST00000641790 1380 ntBASIC16.85■□□□□ 0.29
CNOT4O95628 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 KRT8P11-201ENST00000409686 1436 ntBASIC16.85■□□□□ 0.29
CNOT4O95628 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.85■□□□□ 0.29
CNOT4O95628 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
CNOT4O95628 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.85■□□□□ 0.29
CNOT4O95628 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.84■□□□□ 0.29
CNOT4O95628 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.84■□□□□ 0.29
CNOT4O95628 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CNOT4O95628 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CNOT4O95628 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.84■□□□□ 0.29
CNOT4O95628 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 TSPY17P-201ENST00000450329 467 ntBASIC16.84■□□□□ 0.29
CNOT4O95628 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.84■□□□□ 0.29
CNOT4O95628 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 AC010653.2-201ENST00000623505 997 ntBASIC16.84■□□□□ 0.29
CNOT4O95628 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CNOT4O95628 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.84■□□□□ 0.29
CNOT4O95628 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
CNOT4O95628 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CNOT4O95628 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CNOT4O95628 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.83■□□□□ 0.28
CNOT4O95628 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.83■□□□□ 0.28
CNOT4O95628 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.83■□□□□ 0.28
CNOT4O95628 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.83■□□□□ 0.28
CNOT4O95628 CYP2D8P-201ENST00000433633 1490 ntBASIC16.83■□□□□ 0.28
CNOT4O95628 SDHAP1-207ENST00000440850 2000 ntBASIC16.83■□□□□ 0.28
CNOT4O95628 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.83■□□□□ 0.28
CNOT4O95628 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.83■□□□□ 0.28
CNOT4O95628 KRT8P9-201ENST00000558927 1449 ntBASIC16.83■□□□□ 0.28
CNOT4O95628 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CNOT4O95628 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CNOT4O95628 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.83■□□□□ 0.28
CNOT4O95628 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CNOT4O95628 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 BID-204ENST00000399767 2129 ntTSL 2 BASIC16.82■□□□□ 0.28
CNOT4O95628 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.82■□□□□ 0.28
CNOT4O95628 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.82■□□□□ 0.28
CNOT4O95628 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.82■□□□□ 0.28
CNOT4O95628 AC113347.1-201ENST00000413321 391 ntBASIC16.82■□□□□ 0.28
CNOT4O95628 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.82■□□□□ 0.28
CNOT4O95628 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CNOT4O95628 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.82■□□□□ 0.28
CNOT4O95628 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.82■□□□□ 0.28
CNOT4O95628 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms