Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SEMA3DO95025 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.17■□□□□ 0.5
SEMA3DO95025 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SEMA3DO95025 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 AC004951.3-201ENST00000418645 1148 ntBASIC18.17■□□□□ 0.5
SEMA3DO95025 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SEMA3DO95025 UBE2SP1-201ENST00000450587 669 ntBASIC18.17■□□□□ 0.5
SEMA3DO95025 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.17■□□□□ 0.5
SEMA3DO95025 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.17■□□□□ 0.5
SEMA3DO95025 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.17■□□□□ 0.5
SEMA3DO95025 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.17■□□□□ 0.5
SEMA3DO95025 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SEMA3DO95025 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 AC006333.2-201ENST00000607957 2099 ntBASIC18.17■□□□□ 0.5
SEMA3DO95025 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SEMA3DO95025 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SEMA3DO95025 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.17■□□□□ 0.5
SEMA3DO95025 RCC2P6-201ENST00000526625 1557 ntBASIC18.17■□□□□ 0.5
SEMA3DO95025 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.16■□□□□ 0.5
SEMA3DO95025 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SEMA3DO95025 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 ABHD17AP1-201ENST00000358206 933 ntBASIC18.16■□□□□ 0.5
SEMA3DO95025 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.16■□□□□ 0.5
SEMA3DO95025 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.16■□□□□ 0.5
SEMA3DO95025 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 CR392000.1-201ENST00000624770 1228 ntBASIC18.16■□□□□ 0.5
SEMA3DO95025 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.16■□□□□ 0.5
SEMA3DO95025 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.16■□□□□ 0.5
SEMA3DO95025 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
SEMA3DO95025 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SEMA3DO95025 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 KRT8P11-201ENST00000409686 1436 ntBASIC18.15■□□□□ 0.5
SEMA3DO95025 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.15■□□□□ 0.5
SEMA3DO95025 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.15■□□□□ 0.5
SEMA3DO95025 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.15■□□□□ 0.5
SEMA3DO95025 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.15■□□□□ 0.5
SEMA3DO95025 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SEMA3DO95025 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.15■□□□□ 0.5
SEMA3DO95025 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.15■□□□□ 0.5
SEMA3DO95025 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.15■□□□□ 0.5
SEMA3DO95025 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.15■□□□□ 0.5
SEMA3DO95025 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.15■□□□□ 0.5
SEMA3DO95025 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
SEMA3DO95025 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SEMA3DO95025 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
SEMA3DO95025 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SEMA3DO95025 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.14■□□□□ 0.49
SEMA3DO95025 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SEMA3DO95025 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SEMA3DO95025 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.14■□□□□ 0.49
SEMA3DO95025 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SEMA3DO95025 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.14■□□□□ 0.49
SEMA3DO95025 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.14■□□□□ 0.49
SEMA3DO95025 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SEMA3DO95025 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.14■□□□□ 0.49
SEMA3DO95025 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms