Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.02■□□□□ 0.64
SHOX2O60902 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.02■□□□□ 0.64
SHOX2O60902 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SHOX2O60902 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.02■□□□□ 0.63
SHOX2O60902 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHOX2O60902 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.02■□□□□ 0.63
SHOX2O60902 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SHOX2O60902 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.01■□□□□ 0.63
SHOX2O60902 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
SHOX2O60902 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SHOX2O60902 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SHOX2O60902 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.01■□□□□ 0.63
SHOX2O60902 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.01■□□□□ 0.63
SHOX2O60902 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.01■□□□□ 0.63
SHOX2O60902 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 KRT18P20-201ENST00000548986 1279 ntBASIC19.01■□□□□ 0.63
SHOX2O60902 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.01■□□□□ 0.63
SHOX2O60902 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC19.01■□□□□ 0.63
SHOX2O60902 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
SHOX2O60902 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.01■□□□□ 0.63
SHOX2O60902 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.01■□□□□ 0.63
SHOX2O60902 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
SHOX2O60902 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHOX2O60902 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SHOX2O60902 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHOX2O60902 MTURN-203ENST00000409688 843 ntTSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19■□□□□ 0.63
SHOX2O60902 AC116351.2-201ENST00000606540 1585 ntBASIC19■□□□□ 0.63
SHOX2O60902 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
SHOX2O60902 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19■□□□□ 0.63
SHOX2O60902 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SHOX2O60902 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SHOX2O60902 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19■□□□□ 0.63
SHOX2O60902 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19■□□□□ 0.63
SHOX2O60902 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19■□□□□ 0.63
SHOX2O60902 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SHOX2O60902 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.99■□□□□ 0.63
SHOX2O60902 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.99■□□□□ 0.63
SHOX2O60902 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SHOX2O60902 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.99■□□□□ 0.63
SHOX2O60902 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 SUDS3P1-201ENST00000505831 966 ntBASIC18.99■□□□□ 0.63
SHOX2O60902 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SHOX2O60902 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.99■□□□□ 0.63
SHOX2O60902 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SHOX2O60902 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.99■□□□□ 0.63
SHOX2O60902 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.98■□□□□ 0.63
SHOX2O60902 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.98■□□□□ 0.63
SHOX2O60902 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.98■□□□□ 0.63
SHOX2O60902 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.98■□□□□ 0.63
SHOX2O60902 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.98■□□□□ 0.63
SHOX2O60902 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.98■□□□□ 0.63
SHOX2O60902 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHOX2O60902 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 9.9 ms