Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL6A5A8TX70 KRT8P3-201ENST00000519669 1449 ntBASIC14.72□□□□□ -0.05
COL6A5A8TX70 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 AC005336.2-201ENST00000593183 939 ntBASIC14.71□□□□□ -0.05
COL6A5A8TX70 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 CASK-201ENST00000378154 2494 ntTSL 5 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC14.71□□□□□ -0.05
COL6A5A8TX70 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL6A5A8TX70 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 HIST2H3DP1-201ENST00000401004 416 ntBASIC14.71□□□□□ -0.06
COL6A5A8TX70 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.71□□□□□ -0.06
COL6A5A8TX70 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.71□□□□□ -0.06
COL6A5A8TX70 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.71□□□□□ -0.06
COL6A5A8TX70 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14.71□□□□□ -0.06
COL6A5A8TX70 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.71□□□□□ -0.06
COL6A5A8TX70 AC008608.2-201ENST00000606089 416 ntBASIC14.71□□□□□ -0.06
COL6A5A8TX70 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL6A5A8TX70 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC14.71□□□□□ -0.06
COL6A5A8TX70 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 IGHGP-201ENST00000390555 1178 ntBASIC14.7□□□□□ -0.06
COL6A5A8TX70 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.7□□□□□ -0.06
COL6A5A8TX70 BCRP1-201ENST00000444246 691 ntBASIC14.7□□□□□ -0.06
COL6A5A8TX70 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A5A8TX70 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A5A8TX70 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A5A8TX70 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A5A8TX70 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
COL6A5A8TX70 MCCD1P2-201ENST00000423228 335 ntBASIC14.7□□□□□ -0.06
COL6A5A8TX70 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.7□□□□□ -0.06
COL6A5A8TX70 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 AC254562.1-201ENST00000417586 456 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 HS6ST1P1-201ENST00000481504 1234 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 AC012640.2-201ENST00000561606 901 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 PNMT-203ENST00000581428 677 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 AF228730.6-201ENST00000641497 218 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 AC084121.3-201ENST00000641716 218 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 AC105233.6-201ENST00000642093 218 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 SMG8-203ENST00000578922 2178 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
COL6A5A8TX70 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 YBX1P5-201ENST00000509441 847 ntBASIC14.69□□□□□ -0.06
COL6A5A8TX70 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.69□□□□□ -0.06
COL6A5A8TX70 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms