Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AL512353.2-201ENST00000448759 1962 ntBASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 WIZP1-201ENST00000531444 2299 ntBASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CPSF4LA6NMK7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
CPSF4LA6NMK7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 Z98044.1-201ENST00000632503 1764 ntBASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 AP003097.1-201ENST00000530657 1135 ntBASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 AC004264.1-201ENST00000608354 794 ntBASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 HLA-A-209ENST00000638375 975 ntBASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 AC009113.1-201ENST00000570267 2443 ntBASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CPSF4LA6NMK7 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 AC093525.10-201ENST00000625130 1569 ntBASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 AL160286.2-201ENST00000567150 934 ntBASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 C1QL1P1-201ENST00000568105 661 ntBASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CPSF4LA6NMK7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CPSF4LA6NMK7 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms