Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CCDC85CA6NKD9 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC85CA6NKD9 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
CCDC85CA6NKD9 AC093028.1-201ENST00000622998 982 ntBASIC21.03■□□□□ 0.96
CCDC85CA6NKD9 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC85CA6NKD9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.03■□□□□ 0.96
CCDC85CA6NKD9 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 OR7E14P-202ENST00000530490 1290 ntBASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 TREX1-205ENST00000625293 1783 ntBASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CCDC85CA6NKD9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
CCDC85CA6NKD9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CCDC85CA6NKD9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 IGHGP-201ENST00000390555 1178 ntBASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AL023284.2-201ENST00000405850 579 ntBASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AC005336.2-201ENST00000593183 939 ntBASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AC012645.4-201ENST00000610691 1061 ntBASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CCDC85CA6NKD9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC85CA6NKD9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 INIP-202ENST00000374236 874 ntTSL 2 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 CRCP-205ENST00000431089 942 ntTSL 2 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 AC093512.1-201ENST00000617969 520 ntBASIC21■□□□□ 0.95
CCDC85CA6NKD9 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21■□□□□ 0.95
CCDC85CA6NKD9 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC85CA6NKD9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC85CA6NKD9 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 AC121338.2-201ENST00000622535 1744 ntBASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 KRT8P3-201ENST00000519669 1449 ntBASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 MCCD1P2-201ENST00000423228 335 ntBASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC85CA6NKD9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms