Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMIM28A0A1B0GU29 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.36■□□□□ 0.85
SMIM28A0A1B0GU29 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SMIM28A0A1B0GU29 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMIM28A0A1B0GU29 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SMIM28A0A1B0GU29 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.36■□□□□ 0.85
SMIM28A0A1B0GU29 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 MCCD1P1-208ENST00000445732 328 ntBASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 AC092647.4-201ENST00000457211 535 ntBASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 MYC-208ENST00000641036 567 ntBASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SMIM28A0A1B0GU29 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 AL512353.2-201ENST00000448759 1962 ntBASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 HOMER2P1-201ENST00000455653 964 ntBASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 AC036111.1-201ENST00000533973 1582 ntBASIC20.34■□□□□ 0.85
SMIM28A0A1B0GU29 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 GCSHP2-201ENST00000560971 527 ntBASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
SMIM28A0A1B0GU29 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.33■□□□□ 0.84
SMIM28A0A1B0GU29 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 MIR3180-5-201ENST00000583743 153 ntBASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMIM28A0A1B0GU29 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms