Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.65□□□□□ -1.51
TRIM35Q9UPQ4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 RNU4-36P-201ENST00000364294 144 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 RNU6-1280P-201ENST00000365211 107 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP22-201ENST00000365393 109 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 SNORA62-201ENST00000365493 153 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 MIR548B-201ENST00000385247 97 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 HMGN2P30-201ENST00000423237 256 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 AC092047.1-201ENST00000424997 240 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 RPL23AP67-201ENST00000465341 474 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 RNU6-830P-201ENST00000516353 107 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 DEFB131E-201ENST00000532329 154 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 AC107294.3-201ENST00000609211 526 ntBASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM35Q9UPQ4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 RNY3P2-201ENST00000362918 102 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP175-201ENST00000364275 119 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP235-201ENST00000365411 114 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP201-201ENST00000410316 124 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 AL353689.1-201ENST00000438895 199 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 AC109327.1-201ENST00000471666 403 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP519-201ENST00000516480 119 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP73-201ENST00000516744 108 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 MIR3129-201ENST00000581095 76 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 MIR3939-201ENST00000582614 106 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 AL023881.1-201ENST00000621088 301 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 MIR3653-201ENST00000625572 110 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 MIR6830-201ENST00000636015 70 ntBASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM35Q9UPQ4 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 RNU1-14P-201ENST00000362759 152 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 EIF4EP4-201ENST00000424916 578 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 NDUFB1P1-201ENST00000435191 180 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 AL121890.1-201ENST00000435457 205 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 ABCF2P2-201ENST00000450549 296 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 AL451007.1-201ENST00000595491 289 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 AL034555.1-201ENST00000604816 211 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 FTX_3.1-201ENST00000610451 147 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 AC103988.1-201ENST00000566382 2177 ntBASIC5.62□□□□□ -1.51
TRIM35Q9UPQ4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 Y_RNA.66-201ENST00000362862 102 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP515-201ENST00000364570 118 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 Y_RNA.344-201ENST00000365381 112 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 CYCSP48-201ENST00000417124 323 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 RNA5SP360-201ENST00000516555 118 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AC006064.5-201ENST00000541782 248 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 EIF4A1P12-201ENST00000551910 141 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 MIR4662B-201ENST00000579498 81 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AC004925.1-201ENST00000624256 2706 ntBASIC5.61□□□□□ -1.51
TRIM35Q9UPQ4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 SNORA18.2-201ENST00000383865 132 ntBASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 AC091390.1-201ENST00000433904 331 ntBASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 AC009963.2-201ENST00000453431 138 ntBASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 RN7SL600P-201ENST00000581811 299 ntBASIC5.6□□□□□ -1.51
TRIM35Q9UPQ4 FAM27D1-201ENST00000612308 341 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms