Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
HIF3AQ9Y2N7 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-799P-201ENST00000363567 107 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-1048P-201ENST00000364054 107 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RNVU1-6-201ENST00000364688 164 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-622P-201ENST00000384272 103 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 SNORD37.2-201ENST00000391075 66 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 U3.22-201ENST00000391120 215 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 SNORA26.5-201ENST00000391215 123 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RNU2-37P-201ENST00000410695 177 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC016397.1-201ENST00000412463 242 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC006461.1-201ENST00000412637 326 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC096649.2-201ENST00000416186 393 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC099548.1-201ENST00000421443 426 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AL135790.2-201ENST00000437701 267 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 HMGB1P37-201ENST00000439613 609 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC073264.2-201ENST00000448886 166 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RPS29P22-201ENST00000472363 168 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RN7SL860P-201ENST00000473738 223 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC006517.1-201ENST00000480485 328 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 YWHAEP4-201ENST00000505390 198 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 RNU6-107P-201ENST00000516643 102 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC069240.1-201ENST00000548774 375 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 MIR4330-201ENST00000579077 105 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AC006380.1-201ENST00000603598 186 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 AL110115.1-201ENST00000614396 364 ntBASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
HIF3AQ9Y2N7 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.9□□□□□ -1.78
HIF3AQ9Y2N7 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
HIF3AQ9Y2N7 AF127577.6-201ENST00000623352 2191 ntBASIC3.9□□□□□ -1.78
HIF3AQ9Y2N7 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HIF3AQ9Y2N7 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.78
HIF3AQ9Y2N7 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
HIF3AQ9Y2N7 AC079741.1-201ENST00000321498 212 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-801P-201ENST00000364087 105 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-270P-201ENST00000364131 105 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 SNORA56-201ENST00000383966 129 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 SNORD66.1-201ENST00000391230 76 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 HSPE1P26-201ENST00000405341 275 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 U3.40-201ENST00000408706 208 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 AC019205.3-201ENST00000424573 156 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 AC007215.1-201ENST00000464893 276 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RPL35AP15-201ENST00000468042 339 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RN7SL354P-201ENST00000469282 294 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RN7SL738P-201ENST00000470264 297 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 PDCD5P2-201ENST00000507570 312 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RNU4-57P-201ENST00000515980 135 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RNU1-61P-201ENST00000516107 151 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-436P-201ENST00000516171 114 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 ACA59.2-201ENST00000517061 156 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 IFITM8P-201ENST00000522529 394 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 AC006199.1-201ENST00000548728 219 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
HIF3AQ9Y2N7 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-1298P-201ENST00000362456 101 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.172-201ENST00000363765 102 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-1056P-201ENST00000383996 107 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 Y_RNA.525-201ENST00000384570 113 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 RPL21P126-201ENST00000470049 478 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 PARP4P3-201ENST00000510265 317 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 RNU6-453P-201ENST00000516819 85 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AC115990.1-201ENST00000526957 301 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AC109810.1-201ENST00000534066 224 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AP006289.1-201ENST00000538089 277 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 HIGD1AP1-201ENST00000550979 275 ntBASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC3.89□□□□□ -1.79
HIF3AQ9Y2N7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 144.6 ms