Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.251-201ENST00000364551 99 ntBASIC4.25□□□□□ -1.73
MSX1P28360 Y_RNA.310-201ENST00000365063 113 ntBASIC4.25□□□□□ -1.73
MSX1P28360 RNU6-728P-201ENST00000365375 104 ntBASIC4.25□□□□□ -1.73
MSX1P28360 U3.15-201ENST00000365398 212 ntBASIC4.25□□□□□ -1.73
MSX1P28360 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX1P28360 Y_RNA.393-201ENST00000383936 102 ntBASIC4.25□□□□□ -1.73
MSX1P28360 Y_RNA.456-201ENST00000384232 111 ntBASIC4.25□□□□□ -1.73
MSX1P28360 PTMAP5-201ENST00000393073 333 ntBASIC4.25□□□□□ -1.73
MSX1P28360 AL606845.1-201ENST00000404881 255 ntBASIC4.25□□□□□ -1.73
MSX1P28360 RPL23AP48-201ENST00000406913 488 ntBASIC4.25□□□□□ -1.73
MSX1P28360 RNU6-588P-201ENST00000410281 105 ntBASIC4.25□□□□□ -1.73
MSX1P28360 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX1P28360 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX1P28360 AC091153.1-201ENST00000466297 402 ntBASIC4.25□□□□□ -1.73
MSX1P28360 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX1P28360 RNU6-561P-201ENST00000516222 102 ntBASIC4.25□□□□□ -1.73
MSX1P28360 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX1P28360 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX1P28360 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC4.25□□□□□ -1.73
MSX1P28360 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.25□□□□□ -1.73
MSX1P28360 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX1P28360 MIR6830-201ENST00000636015 70 ntBASIC4.25□□□□□ -1.73
MSX1P28360 SCN1A-220ENST00000641603 12506 ntBASIC4.25□□□□□ -1.73
MSX1P28360 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
MSX1P28360 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.25□□□□□ -1.73
MSX1P28360 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
MSX1P28360 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
MSX1P28360 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
MSX1P28360 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.24□□□□□ -1.73
MSX1P28360 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSX1P28360 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.24□□□□□ -1.73
MSX1P28360 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSX1P28360 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
MSX1P28360 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSX1P28360 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
MSX1P28360 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.24□□□□□ -1.73
MSX1P28360 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSX1P28360 MAPK10-303ENST00000641324 3959 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.24□□□□□ -1.73
MSX1P28360 SNORD87-201ENST00000364849 89 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RNA5SP479-201ENST00000364858 117 ntBASIC4.24□□□□□ -1.73
MSX1P28360 MIR23A-201ENST00000385245 73 ntBASIC4.24□□□□□ -1.73
MSX1P28360 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX1P28360 AL591419.1-201ENST00000427423 339 ntBASIC4.24□□□□□ -1.73
MSX1P28360 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX1P28360 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC4.24□□□□□ -1.73
MSX1P28360 AL162591.2-201ENST00000449634 317 ntBASIC4.24□□□□□ -1.73
MSX1P28360 SCARNA10-201ENST00000459255 330 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RNU7-141P-201ENST00000459304 62 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RPS29P20-201ENST00000489592 171 ntBASIC4.24□□□□□ -1.73
MSX1P28360 VWA8P1-201ENST00000510889 176 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RNU5F-2P-201ENST00000516066 82 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RNU6-589P-201ENST00000516485 107 ntBASIC4.24□□□□□ -1.73
MSX1P28360 RNU6-344P-201ENST00000516635 111 ntBASIC4.24□□□□□ -1.73
MSX1P28360 AP004242.1-201ENST00000533701 349 ntBASIC4.24□□□□□ -1.73
MSX1P28360 POC1B-211ENST00000549504 581 ntTSL 5 BASIC4.24□□□□□ -1.73
MSX1P28360 AC024614.2-201ENST00000577584 372 ntBASIC4.24□□□□□ -1.73
MSX1P28360 SNORD11B-201ENST00000607707 90 ntBASIC4.24□□□□□ -1.73
MSX1P28360 U3.53-201ENST00000628922 216 ntBASIC4.24□□□□□ -1.73
MSX1P28360 AC068205.3-201ENST00000636385 468 ntBASIC4.24□□□□□ -1.73
MSX1P28360 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
MSX1P28360 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
MSX1P28360 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC4.24□□□□□ -1.73
MSX1P28360 FAM35BP-202ENST00000497389 3337 ntBASIC4.24□□□□□ -1.73
MSX1P28360 SALL4P2-201ENST00000423288 2910 ntBASIC4.24□□□□□ -1.73
MSX1P28360 AL136164.4-201ENST00000625013 2135 ntBASIC4.24□□□□□ -1.73
MSX1P28360 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
MSX1P28360 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
MSX1P28360 RNU6-915P-201ENST00000364943 103 ntBASIC4.23□□□□□ -1.73
MSX1P28360 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSX1P28360 SNORA22-201ENST00000383907 134 ntBASIC4.23□□□□□ -1.73
MSX1P28360 RNU6-144P-201ENST00000383951 107 ntBASIC4.23□□□□□ -1.73
MSX1P28360 U1.1-201ENST00000384101 164 ntBASIC4.23□□□□□ -1.73
MSX1P28360 MIR921-201ENST00000401133 56 ntBASIC4.23□□□□□ -1.73
MSX1P28360 RN7SKP27-201ENST00000410684 333 ntBASIC4.23□□□□□ -1.73
MSX1P28360 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.23□□□□□ -1.73
MSX1P28360 CYCSP48-201ENST00000417124 323 ntBASIC4.23□□□□□ -1.73
MSX1P28360 HSPE1P13-201ENST00000451143 297 ntBASIC4.23□□□□□ -1.73
MSX1P28360 AC108022.1-201ENST00000493466 478 ntBASIC4.23□□□□□ -1.73
MSX1P28360 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.23□□□□□ -1.73
MSX1P28360 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.23□□□□□ -1.73
MSX1P28360 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX1P28360 MIR4724-201ENST00000579485 89 ntBASIC4.23□□□□□ -1.73
MSX1P28360 AC012640.5-201ENST00000623897 319 ntBASIC4.23□□□□□ -1.73
MSX1P28360 AC112200.1-201ENST00000625015 234 ntBASIC4.23□□□□□ -1.73
MSX1P28360 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX1P28360 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX1P28360 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX1P28360 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX1P28360 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSX1P28360 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX1P28360 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
MSX1P28360 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSX1P28360 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.23□□□□□ -1.73
MSX1P28360 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC4.22□□□□□ -1.73
MSX1P28360 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSX1P28360 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSX1P28360 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
MSX1P28360 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
MSX1P28360 RNA5SP447-201ENST00000363749 119 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms