Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FTH1P11-201ENST00000517577 551 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 MIR548X2-201ENST00000579776 100 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 MIR4431-201ENST00000579990 94 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 RN7SL435P-201ENST00000584418 282 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 AC015914.2-201ENST00000618167 288 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 AL445567.2-201ENST00000618935 498 ntBASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.87□□□□□ -1.63
LIMD1Q9UGP4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 AL592182.3-201ENST00000642132 3304 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 Y_RNA.415-201ENST00000384012 112 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 AC079168.2-201ENST00000453977 416 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 RNU6-426P-201ENST00000516464 97 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 AC093249.4-201ENST00000564755 259 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 MIR4429-201ENST00000580105 73 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 MIR4744-201ENST00000581563 82 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 TCL6_2.1-201ENST00000615162 119 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 AF117829.1-206ENST00000621883 3802 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 U3.53-201ENST00000628922 216 ntBASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.86□□□□□ -1.63
LIMD1Q9UGP4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RNU1-94P-201ENST00000362627 173 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RNU6-1010P-201ENST00000362757 107 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 Y_RNA.287-201ENST00000364853 94 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 MIR186-201ENST00000384988 86 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RPS26P8-201ENST00000393490 348 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 AC245291.1-201ENST00000419501 328 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 snoU13.14-201ENST00000459372 104 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 AC105137.1-201ENST00000484355 562 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RNU2-58P-201ENST00000516403 183 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RNU7-121P-201ENST00000516604 62 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 Y_RNA.719-201ENST00000517156 106 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RNU6-709P-201ENST00000517257 104 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 MRPL49P2-201ENST00000521066 465 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 TRAV8-5-201ENST00000537369 341 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 EIF4A1P12-201ENST00000551910 141 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 HMGN2P15-201ENST00000585707 270 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RPS15AP11-201ENST00000594193 385 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 PCGEM1.1-201ENST00000613431 131 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 AC013791.1-201ENST00000616619 62 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 AC005562.2-201ENST00000618264 111 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 RNA5SP196-201ENST00000625967 102 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 AC007496.3-201ENST00000624987 3443 ntBASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.85□□□□□ -1.63
LIMD1Q9UGP4 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 SNORA8.3-201ENST00000384679 139 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 RNA5SP201-201ENST00000410316 124 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 TOMM22P2-201ENST00000430735 237 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 AL591473.1-201ENST00000464297 313 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 RPL31P41-201ENST00000477967 372 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 AC107027.2-201ENST00000512197 115 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 MIR6076-201ENST00000617521 113 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 AC034229.5-201ENST00000624258 185 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 AC068205.3-201ENST00000636385 468 ntBASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
LIMD1Q9UGP4 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
LIMD1Q9UGP4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.84□□□□□ -1.64
LIMD1Q9UGP4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
LIMD1Q9UGP4 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms