Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL9A1P20849 AC073346.2-201ENST00000624724 2058 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.04□□□□□ -1.6
COL9A1P20849 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 RNA5SP283-201ENST00000365604 119 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
COL9A1P20849 SNORA70.10-201ENST00000384515 134 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 AC110768.1-201ENST00000509222 400 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 AC015795.1-201ENST00000513669 327 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 RNU1-104P-201ENST00000517280 175 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 POC1B-211ENST00000549504 581 ntTSL 5 BASIC5.04□□□□□ -1.6
COL9A1P20849 AL022345.2-201ENST00000606307 135 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 MIR492-201ENST00000638676 116 ntBASIC5.04□□□□□ -1.6
COL9A1P20849 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.04□□□□□ -1.6
COL9A1P20849 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
COL9A1P20849 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.04□□□□□ -1.6
COL9A1P20849 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
COL9A1P20849 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL9A1P20849 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.03□□□□□ -1.6
COL9A1P20849 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC5.03□□□□□ -1.6
COL9A1P20849 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
COL9A1P20849 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.03□□□□□ -1.6
COL9A1P20849 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.03□□□□□ -1.6
COL9A1P20849 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
COL9A1P20849 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
COL9A1P20849 RNU4-41P-201ENST00000364426 143 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 RNU6-820P-201ENST00000384273 107 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 SNORA67.2-201ENST00000384300 149 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 UBE2Q2P12-201ENST00000414573 204 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 TOMM22P1-201ENST00000418578 312 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 AL591623.2-201ENST00000449978 222 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 RPL23AP56-201ENST00000460778 453 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 RN7SL197P-201ENST00000466981 299 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.03□□□□□ -1.6
COL9A1P20849 RNA5SP392-201ENST00000516905 112 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 AC136777.2-201ENST00000522979 358 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC5.03□□□□□ -1.6
COL9A1P20849 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.03□□□□□ -1.6
COL9A1P20849 AC091979.2-201ENST00000607514 214 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 AL138880.2-201ENST00000616214 239 ntBASIC5.03□□□□□ -1.6
COL9A1P20849 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.03□□□□□ -1.6
COL9A1P20849 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.03□□□□□ -1.6
COL9A1P20849 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
COL9A1P20849 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
COL9A1P20849 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.03□□□□□ -1.6
COL9A1P20849 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
COL9A1P20849 AC004817.4-201ENST00000602396 3625 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.02□□□□□ -1.61
COL9A1P20849 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL9A1P20849 Y_RNA.500-201ENST00000384466 111 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 SNORA1.3-201ENST00000384676 136 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 MIR218-2-201ENST00000385006 110 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 MIR873-201ENST00000401120 77 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.02□□□□□ -1.61
COL9A1P20849 RPL23AP82-202ENST00000427528 469 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 AC009238.2-201ENST00000431026 355 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 RPS29P9-201ENST00000440360 171 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 H2AFZP5-201ENST00000446960 382 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 RPL23AP7-203ENST00000449021 469 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 CENPBD1P1-201ENST00000464061 469 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 RPL23AP54-201ENST00000495129 419 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 AC098976.1-201ENST00000513014 541 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC5.02□□□□□ -1.61
COL9A1P20849 AC021739.1-201ENST00000559631 174 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC5.02□□□□□ -1.61
COL9A1P20849 MIR4286-201ENST00000580651 93 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 AC097639.2-201ENST00000603159 172 ntBASIC5.02□□□□□ -1.61
COL9A1P20849 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
COL9A1P20849 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL9A1P20849 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
COL9A1P20849 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
COL9A1P20849 MIR372-201ENST00000362225 67 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 RNA5SP22-201ENST00000365393 109 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 RNA5SP397-201ENST00000391323 118 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC5.01□□□□□ -1.61
COL9A1P20849 RNU2-70P-201ENST00000410718 179 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 AC109327.2-201ENST00000448339 378 ntBASIC5.01□□□□□ -1.61
COL9A1P20849 AL021397.1-201ENST00000451806 248 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms