Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
MSH5O43196 AC006130.2-201ENST00000586202 326 ntBASIC7.65□□□□□ -1.18
MSH5O43196 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.65□□□□□ -1.18
MSH5O43196 AP000769.2-201ENST00000602344 396 ntBASIC7.65□□□□□ -1.18
MSH5O43196 FTX_3.1-201ENST00000610451 147 ntBASIC7.65□□□□□ -1.18
MSH5O43196 AC096577.2-201ENST00000611455 153 ntBASIC7.65□□□□□ -1.18
MSH5O43196 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.19
MSH5O43196 AC126323.6-202ENST00000568092 3511 ntBASIC7.65□□□□□ -1.19
MSH5O43196 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
MSH5O43196 AC073136.1-201ENST00000449426 2884 ntBASIC7.65□□□□□ -1.19
MSH5O43196 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC7.65□□□□□ -1.19
MSH5O43196 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
MSH5O43196 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
MSH5O43196 RNA5SP117-201ENST00000365294 118 ntBASIC7.64□□□□□ -1.19
MSH5O43196 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH5O43196 MIR325-201ENST00000385260 98 ntBASIC7.64□□□□□ -1.19
MSH5O43196 AL645927.1-201ENST00000396783 406 ntBASIC7.64□□□□□ -1.19
MSH5O43196 RN7SL808P-201ENST00000496066 299 ntBASIC7.64□□□□□ -1.19
MSH5O43196 RPS29P21-201ENST00000496272 170 ntBASIC7.64□□□□□ -1.19
MSH5O43196 RN7SL558P-201ENST00000497468 299 ntBASIC7.64□□□□□ -1.19
MSH5O43196 MIR4675-201ENST00000577898 77 ntBASIC7.64□□□□□ -1.19
MSH5O43196 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
MSH5O43196 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC7.64□□□□□ -1.19
MSH5O43196 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH5O43196 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC7.64□□□□□ -1.19
MSH5O43196 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH5O43196 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC7.64□□□□□ -1.19
MSH5O43196 ABCC13-202ENST00000463099 3842 ntBASIC7.64□□□□□ -1.19
MSH5O43196 AC002546.1-201ENST00000588041 2504 ntBASIC7.63□□□□□ -1.19
MSH5O43196 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
MSH5O43196 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSH5O43196 SNORD1C-201ENST00000363315 78 ntBASIC7.63□□□□□ -1.19
MSH5O43196 Y_RNA.171-201ENST00000363760 102 ntBASIC7.63□□□□□ -1.19
MSH5O43196 RNA5SP187-201ENST00000384400 119 ntBASIC7.63□□□□□ -1.19
MSH5O43196 SNORA12-201ENST00000391162 147 ntBASIC7.63□□□□□ -1.19
MSH5O43196 POLR2J4-204ENST00000418424 324 ntBASIC7.63□□□□□ -1.19
MSH5O43196 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC7.63□□□□□ -1.19
MSH5O43196 AL445646.1-201ENST00000431784 216 ntBASIC7.63□□□□□ -1.19
MSH5O43196 RN7SL547P-201ENST00000490793 290 ntBASIC7.63□□□□□ -1.19
MSH5O43196 RN7SKP234-201ENST00000517173 224 ntBASIC7.63□□□□□ -1.19
MSH5O43196 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC7.63□□□□□ -1.19
MSH5O43196 MIR548AE2-201ENST00000583456 67 ntBASIC7.63□□□□□ -1.19
MSH5O43196 AC027229.1-201ENST00000583887 253 ntBASIC7.63□□□□□ -1.19
MSH5O43196 AP005019.3-201ENST00000620418 560 ntBASIC7.63□□□□□ -1.19
MSH5O43196 CU639417.4-201ENST00000623928 207 ntBASIC7.63□□□□□ -1.19
MSH5O43196 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSH5O43196 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
MSH5O43196 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
MSH5O43196 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC7.63□□□□□ -1.19
MSH5O43196 BCLAF1P1-201ENST00000505813 2752 ntBASIC7.63□□□□□ -1.19
MSH5O43196 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC7.63□□□□□ -1.19
MSH5O43196 AL672167.1-205ENST00000641112 3080 ntBASIC7.63□□□□□ -1.19
MSH5O43196 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 RNA5SP507-201ENST00000363603 121 ntBASIC7.62□□□□□ -1.19
MSH5O43196 RNU6-669P-201ENST00000365575 107 ntBASIC7.62□□□□□ -1.19
MSH5O43196 RNU6-936P-201ENST00000384005 107 ntBASIC7.62□□□□□ -1.19
MSH5O43196 AC016739.1-201ENST00000405359 345 ntBASIC7.62□□□□□ -1.19
MSH5O43196 MRPL53P1-201ENST00000414323 319 ntBASIC7.62□□□□□ -1.19
MSH5O43196 RPS23P6-201ENST00000466136 431 ntBASIC7.62□□□□□ -1.19
MSH5O43196 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.62□□□□□ -1.19
MSH5O43196 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC7.62□□□□□ -1.19
MSH5O43196 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC7.62□□□□□ -1.19
MSH5O43196 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
MSH5O43196 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
MSH5O43196 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC7.62□□□□□ -1.19
MSH5O43196 AC005332.5-201ENST00000591222 2919 ntBASIC7.62□□□□□ -1.19
MSH5O43196 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSH5O43196 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSH5O43196 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC7.61□□□□□ -1.19
MSH5O43196 Y_RNA.332-201ENST00000365271 113 ntBASIC7.61□□□□□ -1.19
MSH5O43196 MIR433-201ENST00000384837 93 ntBASIC7.61□□□□□ -1.19
MSH5O43196 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC7.61□□□□□ -1.19
MSH5O43196 RNU6-615P-201ENST00000516065 106 ntBASIC7.61□□□□□ -1.19
MSH5O43196 IGLV3-30-201ENST00000524362 298 ntBASIC7.61□□□□□ -1.19
MSH5O43196 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC7.61□□□□□ -1.19
MSH5O43196 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC7.61□□□□□ -1.19
MSH5O43196 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.61□□□□□ -1.19
MSH5O43196 ZC3H12C-202ENST00000453089 9542 ntTSL 2 BASIC7.61□□□□□ -1.19
MSH5O43196 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC7.61□□□□□ -1.19
MSH5O43196 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSH5O43196 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC7.61□□□□□ -1.19
MSH5O43196 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSH5O43196 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC7.61□□□□□ -1.19
MSH5O43196 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
MSH5O43196 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
MSH5O43196 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC7.6□□□□□ -1.19
MSH5O43196 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSH5O43196 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSH5O43196 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC7.6□□□□□ -1.19
MSH5O43196 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.19
MSH5O43196 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
MSH5O43196 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms