Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AC243964.1-201ENST00000441814 261 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 RNU6-1061P-201ENST00000516530 99 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 RNU6-709P-201ENST00000517257 104 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AC062037.1-201ENST00000605302 128 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AL121890.5-201ENST00000620848 304 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 SCARNA4-202ENST00000625402 129 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AC090971.4-201ENST00000560291 1800 ntBASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
COL25A1Q9BXS0 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 SNORD114-19-201ENST00000363072 75 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RNU6-1249P-201ENST00000363237 111 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RNU6-527P-201ENST00000363425 104 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RNU6-1082P-201ENST00000364574 107 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 SNORD32A-201ENST00000364805 84 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 Y_RNA.287-201ENST00000364853 94 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 SNORD58C-201ENST00000365223 64 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 MIR526A2-201ENST00000390198 65 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RPL23AP95-201ENST00000426806 265 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 AC112220.1-201ENST00000434628 355 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 NDUFB4P8-201ENST00000435351 367 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 AL078601.1-201ENST00000444542 271 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 EIF4A1P11-201ENST00000451239 222 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 AC146507.2-201ENST00000460608 476 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RPL31P13-201ENST00000484151 370 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 Y_RNA.692-201ENST00000516627 105 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RPL23AP53-201ENST00000521854 457 ntBASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
COL25A1Q9BXS0 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 SNORD72-201ENST00000390994 80 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 RNU6-1228P-201ENST00000391014 107 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 AL606845.1-201ENST00000404881 255 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 RNA5SP296-201ENST00000410523 111 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 CYCSP49-201ENST00000420810 319 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 AC006028.1-201ENST00000438379 402 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 RPL39P29-201ENST00000447779 157 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 HMGB3P8-201ENST00000449709 577 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 RNU6-572P-201ENST00000516724 80 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 MIR5571-201ENST00000577998 113 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 MIR6839-201ENST00000620425 113 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 MIR4496-201ENST00000635896 61 ntBASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
COL25A1Q9BXS0 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC4.53□□□□□ -1.69
COL25A1Q9BXS0 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.69
COL25A1Q9BXS0 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 U3.9-201ENST00000363823 204 ntBASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 RNU6-728P-201ENST00000365375 104 ntBASIC4.52□□□□□ -1.69
COL25A1Q9BXS0 SNORA72.4-201ENST00000384174 132 ntBASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms