Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORD58.1-201ENST00000391313 66 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 SAR1AP2-201ENST00000392696 594 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 MTCO2P33-201ENST00000402100 465 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 RNA5SP120-201ENST00000410900 112 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 RNU2-25P-201ENST00000411041 191 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.67□□□□□ -1.82
USP39Q53GS9 AL353621.1-201ENST00000418219 243 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AL137014.1-201ENST00000420490 1226 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 EIF4EP2-201ENST00000422816 654 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.67□□□□□ -1.82
USP39Q53GS9 AC004383.1-201ENST00000438135 289 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 RPEP5-201ENST00000441137 268 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 SNORA59A-201ENST00000459326 152 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.67□□□□□ -1.82
USP39Q53GS9 ACA59.1-201ENST00000515966 143 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 RNU6-911P-201ENST00000516523 104 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 RNU5B-3P-201ENST00000516601 115 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AC144568.1-201ENST00000520139 137 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.67□□□□□ -1.82
USP39Q53GS9 AC005951.2-201ENST00000576282 495 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AL137849.1-201ENST00000604767 169 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AC123912.5-201ENST00000605470 343 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 SNORD39.4-201ENST00000620099 78 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.67□□□□□ -1.82
USP39Q53GS9 AC244205.2-202ENST00000635781 342 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 AP000553.6-201ENST00000641242 118 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP39Q53GS9 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
USP39Q53GS9 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP39Q53GS9 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.67□□□□□ -1.82
USP39Q53GS9 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP39Q53GS9 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.66□□□□□ -1.82
USP39Q53GS9 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP39Q53GS9 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
USP39Q53GS9 AP000560.1-201ENST00000624150 1937 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP39Q53GS9 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.66□□□□□ -1.82
USP39Q53GS9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.66□□□□□ -1.82
USP39Q53GS9 Y_RNA.84-201ENST00000363011 104 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU6-774P-201ENST00000363238 107 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 Y_RNA.183-201ENST00000363882 113 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNY1-201ENST00000364228 113 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU1-33P-201ENST00000364249 162 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 Y_RNA.274-201ENST00000364714 101 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU6-629P-201ENST00000384061 103 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 MIR548H3-201ENST00000408771 118 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU6-1203P-201ENST00000410703 110 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 MYL8P-204ENST00000431574 518 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.66□□□□□ -1.82
USP39Q53GS9 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.66□□□□□ -1.82
USP39Q53GS9 AL139109.1-201ENST00000455491 297 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 AL136097.1-201ENST00000456945 913 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.66□□□□□ -1.82
USP39Q53GS9 SUMO2P6-201ENST00000505273 288 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU1-86P-201ENST00000516108 154 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RNU1-107P-201ENST00000516617 154 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 RN7SKP209-201ENST00000516888 304 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP39Q53GS9 AC008489.1-201ENST00000524271 483 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.66□□□□□ -1.82
USP39Q53GS9 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.66□□□□□ -1.82
USP39Q53GS9 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.66□□□□□ -1.82
USP39Q53GS9 AC004792.1-201ENST00000614523 137 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
USP39Q53GS9 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.66□□□□□ -1.82
USP39Q53GS9 MFSD8-236ENST00000641509 4050 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
USP39Q53GS9 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
USP39Q53GS9 AL021368.2-201ENST00000606125 5352 ntBASIC3.66□□□□□ -1.82
USP39Q53GS9 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.82
USP39Q53GS9 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP39Q53GS9 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP39Q53GS9 Y_RNA.324-201ENST00000365165 102 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 MIR215-201ENST00000384858 110 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 PCNPP3-201ENST00000393579 471 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.65□□□□□ -1.83
USP39Q53GS9 AL591034.2-201ENST00000402839 359 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 RNU2-43P-201ENST00000410306 190 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 RNU4-78P-201ENST00000410940 126 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 AC063979.1-201ENST00000415539 377 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.65□□□□□ -1.83
USP39Q53GS9 AL121871.1-201ENST00000443413 436 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 RBMY2UP-201ENST00000453474 324 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 RNA5SP208-201ENST00000516156 78 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 RN7SKP83-201ENST00000516512 178 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.65□□□□□ -1.83
USP39Q53GS9 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.65□□□□□ -1.83
USP39Q53GS9 MIR548AC-201ENST00000585049 88 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 RPS29P30-201ENST00000600975 111 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 AC073410.2-201ENST00000603240 332 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 AL121917.1-203ENST00000605534 577 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 SCARNA15.3-201ENST00000626315 122 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 SCARNA4.1-201ENST00000628597 123 ntBASIC3.65□□□□□ -1.83
USP39Q53GS9 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
USP39Q53GS9 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP39Q53GS9 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 163.3 ms