Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.7□□□□□ -1.82
USP39Q53GS9 CPDP1-201ENST00000579660 283 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AL158827.2-201ENST00000602494 330 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 BRDTP1-201ENST00000605735 677 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 MIR1244-1-201ENST00000612829 85 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AP001282.2-201ENST00000616149 309 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 AL691447.3-201ENST00000635020 330 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 MIR1244-3-201ENST00000635744 85 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 MIR1244-2-201ENST00000636449 85 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 MIR1244-4-202ENST00000636813 85 ntBASIC3.7□□□□□ -1.82
USP39Q53GS9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
USP39Q53GS9 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.7□□□□□ -1.82
USP39Q53GS9 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.7□□□□□ -1.82
USP39Q53GS9 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP39Q53GS9 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP39Q53GS9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP39Q53GS9 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.69□□□□□ -1.82
USP39Q53GS9 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP39Q53GS9 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP39Q53GS9 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.69□□□□□ -1.82
USP39Q53GS9 RNU6-263P-201ENST00000363811 107 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 RNU6-611P-201ENST00000384276 104 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 Y_RNA.534-201ENST00000384599 112 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AL138878.1-201ENST00000405131 347 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 RNU6-325P-201ENST00000411132 105 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.69□□□□□ -1.82
USP39Q53GS9 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.69□□□□□ -1.82
USP39Q53GS9 NDUFB1P2-201ENST00000449477 176 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 PRELID3BP1-201ENST00000457142 540 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 RNU6-953P-201ENST00000459154 107 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AC098869.1-201ENST00000481627 292 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP39Q53GS9 HMGB1P22-201ENST00000505315 124 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 RNU6-914P-201ENST00000516749 109 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 Y_RNA.700-201ENST00000516806 100 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 SNORA81.3-201ENST00000517283 198 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.69□□□□□ -1.82
USP39Q53GS9 SNRPGP16-201ENST00000533275 226 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 TRAV32-201ENST00000553993 340 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AC130289.1-201ENST00000577321 73 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.69□□□□□ -1.82
USP39Q53GS9 MIR5701-3-201ENST00000578890 82 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 MIR5692A1-201ENST00000580523 69 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 MIR5701-1-201ENST00000585138 82 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 OR1M4P-201ENST00000589199 287 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 MIR5701-2-201ENST00000615634 82 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 MIR8058-201ENST00000615737 89 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AC091903.1-201ENST00000624322 454 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC3.69□□□□□ -1.82
USP39Q53GS9 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.69□□□□□ -1.82
USP39Q53GS9 AC010733.2-201ENST00000589496 5702 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.69□□□□□ -1.82
USP39Q53GS9 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP39Q53GS9 AC005183.1-201ENST00000603687 1979 ntBASIC3.69□□□□□ -1.82
USP39Q53GS9 AC006504.1-201ENST00000562493 3666 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
USP39Q53GS9 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.68□□□□□ -1.82
USP39Q53GS9 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 Y_RNA.150-201ENST00000363562 102 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 SNORA38.1-201ENST00000364172 131 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 RNU6-790P-201ENST00000384479 105 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 Y_RNA.533-201ENST00000384596 114 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 MIR625-201ENST00000385047 85 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 HSPE1P8-201ENST00000406997 288 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 AP000275.1-201ENST00000411943 390 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 ARF4P2-201ENST00000430209 526 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 RPL7P5-201ENST00000471472 736 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 HMGN2P13-201ENST00000476476 274 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 RAC1P2-201ENST00000511164 579 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 SNORA31.22-201ENST00000517204 135 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 AC034114.1-201ENST00000520293 285 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.68□□□□□ -1.82
USP39Q53GS9 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.68□□□□□ -1.82
USP39Q53GS9 AC004584.2-201ENST00000570407 410 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC3.68□□□□□ -1.82
USP39Q53GS9 MIR4273-201ENST00000582824 84 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 AL390123.1-201ENST00000603216 237 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 MIR3976-201ENST00000606807 139 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.68□□□□□ -1.82
USP39Q53GS9 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP39Q53GS9 AC002546.1-201ENST00000588041 2504 ntBASIC3.68□□□□□ -1.82
USP39Q53GS9 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.68□□□□□ -1.82
USP39Q53GS9 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.67□□□□□ -1.82
USP39Q53GS9 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP39Q53GS9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP39Q53GS9 AL136164.4-201ENST00000625013 2135 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 RNU6-212P-201ENST00000362642 104 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 SNORD27-201ENST00000363981 72 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 U8.8-201ENST00000365399 135 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.67□□□□□ -1.82
USP39Q53GS9 RNU6-708P-201ENST00000384217 107 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 Y_RNA.471-201ENST00000384312 102 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 MIR591-201ENST00000385290 95 ntBASIC3.67□□□□□ -1.82
USP39Q53GS9 U3.19-201ENST00000390893 196 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms