Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.83■■□□□ 1.09
DDX41Q9UJV9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
DDX41Q9UJV9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX41Q9UJV9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX41Q9UJV9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
DDX41Q9UJV9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.82■■□□□ 1.08
DDX41Q9UJV9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 ARMC10P1-201ENST00000313754 855 ntBASIC21.81■■□□□ 1.08
DDX41Q9UJV9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 LIN28AP1-201ENST00000429574 405 ntBASIC21.81■■□□□ 1.08
DDX41Q9UJV9 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.81■■□□□ 1.08
DDX41Q9UJV9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.81■■□□□ 1.08
DDX41Q9UJV9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 AC125437.2-201ENST00000625180 2167 ntBASIC21.8■■□□□ 1.08
DDX41Q9UJV9 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 SLC25A1P2-201ENST00000430693 912 ntBASIC21.8■■□□□ 1.08
DDX41Q9UJV9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 DUX4L26-201ENST00000489078 1255 ntBASIC21.8■■□□□ 1.08
DDX41Q9UJV9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 AC116562.4-202ENST00000641738 218 ntBASIC21.8■■□□□ 1.08
DDX41Q9UJV9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 KRT8P41-201ENST00000533985 1514 ntBASIC21.8■■□□□ 1.08
DDX41Q9UJV9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
DDX41Q9UJV9 AC093503.3-201ENST00000624917 2352 ntBASIC21.8■■□□□ 1.08
DDX41Q9UJV9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 AL158211.5-201ENST00000623583 2518 ntBASIC21.79■■□□□ 1.08
DDX41Q9UJV9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
DDX41Q9UJV9 AC006011.2-201ENST00000621313 1158 ntBASIC21.79■■□□□ 1.08
DDX41Q9UJV9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms