Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 AC011558.1-201ENST00000623459 338 ntBASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.8■□□□□ 0.92
TRAIPQ9BWF2 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 AC116562.4-201ENST00000641316 2276 ntBASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TRAIPQ9BWF2 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 TSPY21P-201ENST00000433481 731 ntBASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
TRAIPQ9BWF2 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 HOMER2P1-201ENST00000455653 964 ntBASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 AL158211.5-201ENST00000623583 2518 ntBASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAIPQ9BWF2 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRAIPQ9BWF2 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.77■□□□□ 0.91
TRAIPQ9BWF2 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.77■□□□□ 0.91
TRAIPQ9BWF2 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 AL031133.1-201ENST00000406807 723 ntBASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.76■□□□□ 0.91
TRAIPQ9BWF2 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms