Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 MESTP1-201ENST00000404287 994 ntBASIC16.93■□□□□ 0.3
USB1Q9BQ65 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 FAM210CP-201ENST00000445714 574 ntBASIC16.93■□□□□ 0.3
USB1Q9BQ65 TSPY15P-201ENST00000457163 923 ntBASIC16.93■□□□□ 0.3
USB1Q9BQ65 AC128688.1-201ENST00000487626 519 ntBASIC16.93■□□□□ 0.3
USB1Q9BQ65 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 AC011298.2-201ENST00000617989 482 ntBASIC16.93■□□□□ 0.3
USB1Q9BQ65 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
USB1Q9BQ65 RCC2P6-201ENST00000526625 1557 ntBASIC16.93■□□□□ 0.3
USB1Q9BQ65 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.93■□□□□ 0.3
USB1Q9BQ65 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 FAM207BP-201ENST00000447172 505 ntBASIC16.92■□□□□ 0.3
USB1Q9BQ65 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 AC097488.1-201ENST00000507834 756 ntBASIC16.92■□□□□ 0.3
USB1Q9BQ65 EGLN1P1-201ENST00000531623 762 ntBASIC16.92■□□□□ 0.3
USB1Q9BQ65 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 AC005332.8-201ENST00000622750 2735 ntBASIC16.92■□□□□ 0.3
USB1Q9BQ65 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
USB1Q9BQ65 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
USB1Q9BQ65 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 AC011506.1-201ENST00000474329 610 ntBASIC16.91■□□□□ 0.3
USB1Q9BQ65 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
USB1Q9BQ65 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC16.91■□□□□ 0.3
USB1Q9BQ65 AL691432.2-201ENST00000607222 2038 ntBASIC16.91■□□□□ 0.3
USB1Q9BQ65 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USB1Q9BQ65 AC096733.2-201ENST00000609937 1394 ntBASIC16.9■□□□□ 0.3
USB1Q9BQ65 LINC01568-207ENST00000641790 1380 ntBASIC16.9■□□□□ 0.3
USB1Q9BQ65 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USB1Q9BQ65 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
USB1Q9BQ65 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.9■□□□□ 0.3
USB1Q9BQ65 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
USB1Q9BQ65 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.9■□□□□ 0.3
USB1Q9BQ65 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
USB1Q9BQ65 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
USB1Q9BQ65 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.9■□□□□ 0.3
USB1Q9BQ65 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
USB1Q9BQ65 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms