Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 AC009065.1-201ENST00000564055 1225 ntBASIC18.81■□□□□ 0.6
VPS13AQ96RL7 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13AQ96RL7 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 RPSAP43-201ENST00000402237 625 ntBASIC18.8■□□□□ 0.6
VPS13AQ96RL7 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 MIR3197-201ENST00000582241 73 ntBASIC18.8■□□□□ 0.6
VPS13AQ96RL7 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS13AQ96RL7 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AC099336.1-202ENST00000602961 463 ntBASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AL157888.1-201ENST00000631930 593 ntBASIC18.79■□□□□ 0.6
VPS13AQ96RL7 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 AP001271.2-201ENST00000624018 1556 ntBASIC18.79■□□□□ 0.6
VPS13AQ96RL7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS13AQ96RL7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 AC027601.4-201ENST00000611259 610 ntBASIC18.78■□□□□ 0.6
VPS13AQ96RL7 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13AQ96RL7 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 AC104819.1-201ENST00000504587 486 ntBASIC18.77■□□□□ 0.6
VPS13AQ96RL7 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 IGHV3-47-201ENST00000425060 335 ntBASIC18.77■□□□□ 0.6
VPS13AQ96RL7 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS13AQ96RL7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13AQ96RL7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13AQ96RL7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13AQ96RL7 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13AQ96RL7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms