Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.34■□□□□ 0.69
CHFRQ96EP1 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.34■□□□□ 0.69
CHFRQ96EP1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CHFRQ96EP1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CHFRQ96EP1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHFRQ96EP1 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHFRQ96EP1 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHFRQ96EP1 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
CHFRQ96EP1 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.33■□□□□ 0.69
CHFRQ96EP1 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.33■□□□□ 0.69
CHFRQ96EP1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHFRQ96EP1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CHFRQ96EP1 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CHFRQ96EP1 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.33■□□□□ 0.68
CHFRQ96EP1 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.33■□□□□ 0.68
CHFRQ96EP1 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 AC026396.1-201ENST00000419388 421 ntBASIC19.33■□□□□ 0.68
CHFRQ96EP1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.33■□□□□ 0.68
CHFRQ96EP1 AC092119.3-201ENST00000612618 583 ntBASIC19.33■□□□□ 0.68
CHFRQ96EP1 AC079602.3-201ENST00000623931 403 ntBASIC19.33■□□□□ 0.68
CHFRQ96EP1 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CHFRQ96EP1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 SEC1P-202ENST00000473944 940 ntBASIC19.32■□□□□ 0.68
CHFRQ96EP1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHFRQ96EP1 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CHFRQ96EP1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 MIR3180-1-201ENST00000580374 94 ntBASIC19.31■□□□□ 0.68
CHFRQ96EP1 MIR3180-3-201ENST00000584616 94 ntBASIC19.31■□□□□ 0.68
CHFRQ96EP1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHFRQ96EP1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
CHFRQ96EP1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHFRQ96EP1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.3■□□□□ 0.68
CHFRQ96EP1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms