Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SKA1Q96BD8 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
SKA1Q96BD8 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.47■□□□□ 0.71
SKA1Q96BD8 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.47■□□□□ 0.71
SKA1Q96BD8 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.47■□□□□ 0.71
SKA1Q96BD8 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.47■□□□□ 0.71
SKA1Q96BD8 AL445228.2-201ENST00000605589 952 ntBASIC19.47■□□□□ 0.71
SKA1Q96BD8 AC007613.1-201ENST00000572811 2597 ntBASIC19.47■□□□□ 0.71
SKA1Q96BD8 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.47■□□□□ 0.71
SKA1Q96BD8 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SKA1Q96BD8 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 AC009237.14-201ENST00000609975 1594 ntBASIC19.46■□□□□ 0.71
SKA1Q96BD8 KRT8P9-201ENST00000558927 1449 ntBASIC19.46■□□□□ 0.71
SKA1Q96BD8 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 LIN28AP1-201ENST00000429574 405 ntBASIC19.46■□□□□ 0.71
SKA1Q96BD8 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
SKA1Q96BD8 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SKA1Q96BD8 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
SKA1Q96BD8 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 AL049812.1-201ENST00000432563 2267 ntBASIC19.45■□□□□ 0.7
SKA1Q96BD8 TFP1-202ENST00000475455 1573 ntBASIC19.45■□□□□ 0.7
SKA1Q96BD8 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 AL390955.1-201ENST00000428694 934 ntBASIC19.45■□□□□ 0.7
SKA1Q96BD8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SKA1Q96BD8 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.45■□□□□ 0.7
SKA1Q96BD8 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 AC128688.1-201ENST00000487626 519 ntBASIC19.44■□□□□ 0.7
SKA1Q96BD8 KRT18P35-201ENST00000510488 1269 ntBASIC19.44■□□□□ 0.7
SKA1Q96BD8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.44■□□□□ 0.7
SKA1Q96BD8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SKA1Q96BD8 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms