Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 AC128676.1-201ENST00000454392 318 ntBASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 AC133681.1-201ENST00000465482 601 ntBASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC40Q4G0X9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 LETM1P2-201ENST00000597330 2178 ntBASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC40Q4G0X9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CCDC40Q4G0X9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 POU5F1P3-201ENST00000428824 1078 ntBASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 TSPY23P-201ENST00000440136 739 ntBASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 C1QBPP2-201ENST00000528754 825 ntBASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CCDC40Q4G0X9 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CCDC40Q4G0X9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.87■□□□□ 0.93
CCDC40Q4G0X9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms