Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 MIR1233-2-201ENST00000408138 82 ntBASIC20.15■□□□□ 0.82
CHD9Q3L8U1 MIR1233-1-201ENST00000408722 82 ntBASIC20.15■□□□□ 0.82
CHD9Q3L8U1 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 AL136038.4-201ENST00000603606 1261 ntBASIC20.15■□□□□ 0.82
CHD9Q3L8U1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CHD9Q3L8U1 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CHD9Q3L8U1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CHD9Q3L8U1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CHD9Q3L8U1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CHD9Q3L8U1 AC005104.2-201ENST00000427818 678 ntBASIC20.14■□□□□ 0.82
CHD9Q3L8U1 AC091607.1-201ENST00000490318 1060 ntBASIC20.14■□□□□ 0.82
CHD9Q3L8U1 AC139887.3-201ENST00000568585 713 ntBASIC20.14■□□□□ 0.82
CHD9Q3L8U1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 AL023284.2-201ENST00000405850 579 ntBASIC20.14■□□□□ 0.81
CHD9Q3L8U1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 AL512408.1-201ENST00000569378 2000 ntBASIC20.14■□□□□ 0.81
CHD9Q3L8U1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.14■□□□□ 0.81
CHD9Q3L8U1 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 MIR940-201ENST00000401276 94 ntBASIC20.13■□□□□ 0.81
CHD9Q3L8U1 NSUN5P1-202ENST00000421140 1535 ntBASIC20.13■□□□□ 0.81
CHD9Q3L8U1 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.13■□□□□ 0.81
CHD9Q3L8U1 NSUN5P2-203ENST00000457352 1529 ntBASIC20.13■□□□□ 0.81
CHD9Q3L8U1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CHD9Q3L8U1 Z69720.1-201ENST00000601483 472 ntBASIC20.13■□□□□ 0.81
CHD9Q3L8U1 AC112497.1-201ENST00000624824 639 ntBASIC20.13■□□□□ 0.81
CHD9Q3L8U1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 AL390719.2-201ENST00000606993 987 ntBASIC20.12■□□□□ 0.81
CHD9Q3L8U1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 AC018712.1-201ENST00000455767 687 ntBASIC20.12■□□□□ 0.81
CHD9Q3L8U1 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.12■□□□□ 0.81
CHD9Q3L8U1 MIR7706-201ENST00000613747 67 ntBASIC20.12■□□□□ 0.81
CHD9Q3L8U1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms