Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC13.76□□□□□ -0.21
PRKDCP78527 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.76□□□□□ -0.21
PRKDCP78527 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
PRKDCP78527 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.76□□□□□ -0.21
PRKDCP78527 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC13.76□□□□□ -0.21
PRKDCP78527 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 AC004832.2-201ENST00000426397 482 ntBASIC13.76□□□□□ -0.21
PRKDCP78527 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.76□□□□□ -0.21
PRKDCP78527 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.76□□□□□ -0.21
PRKDCP78527 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC13.76□□□□□ -0.21
PRKDCP78527 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC13.76□□□□□ -0.21
PRKDCP78527 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.76□□□□□ -0.21
PRKDCP78527 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
PRKDCP78527 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.75□□□□□ -0.21
PRKDCP78527 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
PRKDCP78527 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC13.75□□□□□ -0.21
PRKDCP78527 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 FGFR3P6-201ENST00000457012 610 ntBASIC13.75□□□□□ -0.21
PRKDCP78527 GREM1-201ENST00000560677 623 ntTSL 4 BASIC13.75□□□□□ -0.21
PRKDCP78527 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.75□□□□□ -0.21
PRKDCP78527 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 AC007274.1-201ENST00000439805 662 ntBASIC13.75□□□□□ -0.21
PRKDCP78527 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
PRKDCP78527 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.75□□□□□ -0.21
PRKDCP78527 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 SMG8-203ENST00000578922 2178 ntBASIC13.74□□□□□ -0.21
PRKDCP78527 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC13.74□□□□□ -0.21
PRKDCP78527 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
PRKDCP78527 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
PRKDCP78527 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
PRKDCP78527 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC13.74□□□□□ -0.21
PRKDCP78527 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC13.74□□□□□ -0.21
PRKDCP78527 AC092364.2-202ENST00000597012 1073 ntBASIC13.74□□□□□ -0.21
PRKDCP78527 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC13.74□□□□□ -0.21
PRKDCP78527 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.74□□□□□ -0.21
PRKDCP78527 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
PRKDCP78527 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
PRKDCP78527 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
PRKDCP78527 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC13.74□□□□□ -0.21
PRKDCP78527 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC13.74□□□□□ -0.21
PRKDCP78527 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
PRKDCP78527 MIR5100-201ENST00000579544 119 ntBASIC13.74□□□□□ -0.21
PRKDCP78527 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.74□□□□□ -0.21
PRKDCP78527 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.74□□□□□ -0.21
PRKDCP78527 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
PRKDCP78527 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
PRKDCP78527 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 CCS-201ENST00000310190 942 ntTSL 5 BASIC13.73□□□□□ -0.21
PRKDCP78527 AC090616.6-201ENST00000582640 721 ntBASIC13.73□□□□□ -0.21
PRKDCP78527 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC13.73□□□□□ -0.21
PRKDCP78527 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
PRKDCP78527 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
PRKDCP78527 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.73□□□□□ -0.21
PRKDCP78527 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC13.73□□□□□ -0.21
PRKDCP78527 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
PRKDCP78527 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
PRKDCP78527 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PRKDCP78527 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.73□□□□□ -0.21
PRKDCP78527 AC079834.2-201ENST00000609776 1949 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms