Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.32■□□□□ 0.84
VCPP55072 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
VCPP55072 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.32■□□□□ 0.84
VCPP55072 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.32■□□□□ 0.84
VCPP55072 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.32■□□□□ 0.84
VCPP55072 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC20.32■□□□□ 0.84
VCPP55072 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.32■□□□□ 0.84
VCPP55072 AC128688.1-201ENST00000487626 519 ntBASIC20.32■□□□□ 0.84
VCPP55072 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.32■□□□□ 0.84
VCPP55072 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.32■□□□□ 0.84
VCPP55072 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.32■□□□□ 0.84
VCPP55072 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.32■□□□□ 0.84
VCPP55072 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.32■□□□□ 0.84
VCPP55072 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.32■□□□□ 0.84
VCPP55072 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
VCPP55072 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.31■□□□□ 0.84
VCPP55072 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.31■□□□□ 0.84
VCPP55072 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
VCPP55072 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.31■□□□□ 0.84
VCPP55072 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.31■□□□□ 0.84
VCPP55072 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.31■□□□□ 0.84
VCPP55072 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
VCPP55072 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
VCPP55072 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.31■□□□□ 0.84
VCPP55072 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.31■□□□□ 0.84
VCPP55072 FAM207BP-201ENST00000447172 505 ntBASIC20.31■□□□□ 0.84
VCPP55072 AC092647.4-201ENST00000457211 535 ntBASIC20.31■□□□□ 0.84
VCPP55072 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.31■□□□□ 0.84
VCPP55072 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.31■□□□□ 0.84
VCPP55072 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.31■□□□□ 0.84
VCPP55072 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
VCPP55072 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
VCPP55072 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.31■□□□□ 0.84
VCPP55072 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
VCPP55072 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VCPP55072 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
VCPP55072 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VCPP55072 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 AL032819.2-201ENST00000624543 2162 ntBASIC20.3■□□□□ 0.84
VCPP55072 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 YBX1P2-201ENST00000489612 999 ntBASIC20.3■□□□□ 0.84
VCPP55072 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.3■□□□□ 0.84
VCPP55072 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 AL691432.3-201ENST00000621860 400 ntBASIC20.3■□□□□ 0.84
VCPP55072 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.3■□□□□ 0.84
VCPP55072 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
VCPP55072 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
VCPP55072 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
VCPP55072 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.3■□□□□ 0.84
VCPP55072 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCPP55072 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
VCPP55072 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCPP55072 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.29■□□□□ 0.84
VCPP55072 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
VCPP55072 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
VCPP55072 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
VCPP55072 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCPP55072 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC20.29■□□□□ 0.84
VCPP55072 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.29■□□□□ 0.84
VCPP55072 TSPY5P-201ENST00000426936 936 ntBASIC20.29■□□□□ 0.84
VCPP55072 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.29■□□□□ 0.84
VCPP55072 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
VCPP55072 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC20.29■□□□□ 0.84
VCPP55072 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.29■□□□□ 0.84
VCPP55072 AL121956.5-201ENST00000625261 221 ntBASIC20.29■□□□□ 0.84
VCPP55072 AL031985.4-201ENST00000642138 673 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms