Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AL157888.1-201ENST00000631930 593 ntBASIC21.94■■□□□ 1.1
HMGCS2P54868 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.94■■□□□ 1.1
HMGCS2P54868 KRT8P3-201ENST00000519669 1449 ntBASIC21.94■■□□□ 1.1
HMGCS2P54868 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
HMGCS2P54868 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGCS2P54868 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.93■■□□□ 1.1
HMGCS2P54868 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
HMGCS2P54868 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
HMGCS2P54868 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 AP002383.4-201ENST00000442518 975 ntBASIC21.93■■□□□ 1.1
HMGCS2P54868 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
HMGCS2P54868 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.93■■□□□ 1.1
HMGCS2P54868 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.93■■□□□ 1.1
HMGCS2P54868 AL162741.1-201ENST00000565563 1558 ntBASIC21.93■■□□□ 1.1
HMGCS2P54868 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 AC112497.1-201ENST00000624824 639 ntBASIC21.93■■□□□ 1.1
HMGCS2P54868 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
HMGCS2P54868 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.92■■□□□ 1.1
HMGCS2P54868 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS2P54868 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS2P54868 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.92■■□□□ 1.1
HMGCS2P54868 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.92■■□□□ 1.1
HMGCS2P54868 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.92■■□□□ 1.1
HMGCS2P54868 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
HMGCS2P54868 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.92■■□□□ 1.1
HMGCS2P54868 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS2P54868 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS2P54868 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
HMGCS2P54868 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGCS2P54868 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
HMGCS2P54868 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGCS2P54868 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HMGCS2P54868 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HMGCS2P54868 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGCS2P54868 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
HMGCS2P54868 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
HMGCS2P54868 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.91■■□□□ 1.1
HMGCS2P54868 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.91■■□□□ 1.1
HMGCS2P54868 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
HMGCS2P54868 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.9■■□□□ 1.1
HMGCS2P54868 PPIH-202ENST00000372549 327 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGCS2P54868 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS2P54868 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGCS2P54868 HLA-F-220ENST00000434407 884 ntBASIC21.9■■□□□ 1.1
HMGCS2P54868 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS2P54868 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.9■■□□□ 1.1
HMGCS2P54868 RN7SL510P-201ENST00000581311 263 ntBASIC21.9■■□□□ 1.1
HMGCS2P54868 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS2P54868 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS2P54868 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
HMGCS2P54868 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.9■■□□□ 1.1
HMGCS2P54868 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.9■■□□□ 1.1
HMGCS2P54868 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms