Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC26.33■■□□□ 1.8
MSH6P52701 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC26.32■■□□□ 1.8
MSH6P52701 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.32■■□□□ 1.8
MSH6P52701 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC26.32■■□□□ 1.8
MSH6P52701 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
MSH6P52701 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
MSH6P52701 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
MSH6P52701 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC26.32■■□□□ 1.8
MSH6P52701 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
MSH6P52701 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
MSH6P52701 NUS1P2-201ENST00000417358 873 ntBASIC26.32■■□□□ 1.8
MSH6P52701 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
MSH6P52701 FAM197Y8-203ENST00000450145 560 ntBASIC26.32■■□□□ 1.8
MSH6P52701 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
MSH6P52701 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC26.32■■□□□ 1.8
MSH6P52701 IGHV3OR16-7-201ENST00000604106 360 ntBASIC26.32■■□□□ 1.8
MSH6P52701 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
MSH6P52701 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
MSH6P52701 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
MSH6P52701 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
MSH6P52701 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
MSH6P52701 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC26.31■■□□□ 1.8
MSH6P52701 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
MSH6P52701 FABP5-202ENST00000396359 986 ntTSL 5 BASIC26.31■■□□□ 1.8
MSH6P52701 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC26.31■■□□□ 1.8
MSH6P52701 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 TERC-201ENST00000602385 541 ntBASIC26.31■■□□□ 1.8
MSH6P52701 CCNC-219ENST00000627680 896 ntTSL 5 BASIC26.31■■□□□ 1.8
MSH6P52701 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
MSH6P52701 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH6P52701 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH6P52701 MED22-202ENST00000371999 987 ntTSL 3 BASIC26.3■■□□□ 1.8
MSH6P52701 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC26.3■■□□□ 1.8
MSH6P52701 AP003733.1-201ENST00000491725 852 ntBASIC26.3■■□□□ 1.8
MSH6P52701 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC26.3■■□□□ 1.8
MSH6P52701 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC26.3■■□□□ 1.8
MSH6P52701 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC26.3■■□□□ 1.8
MSH6P52701 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH6P52701 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC26.3■■□□□ 1.8
MSH6P52701 AC243591.1-201ENST00000452967 1364 ntBASIC26.29■■□□□ 1.8
MSH6P52701 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH6P52701 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH6P52701 NSUN5P1-202ENST00000421140 1535 ntBASIC26.29■■□□□ 1.8
MSH6P52701 NSUN5P2-203ENST00000457352 1529 ntBASIC26.29■■□□□ 1.8
MSH6P52701 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
MSH6P52701 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH6P52701 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH6P52701 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC26.29■■□□□ 1.8
MSH6P52701 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC26.29■■□□□ 1.8
MSH6P52701 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH6P52701 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH6P52701 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC26.29■■□□□ 1.8
MSH6P52701 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH6P52701 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH6P52701 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
MSH6P52701 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC26.28■■□□□ 1.8
MSH6P52701 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC26.28■■□□□ 1.8
MSH6P52701 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC26.28■■□□□ 1.8
MSH6P52701 AL592071.1-201ENST00000611956 408 ntBASIC26.28■■□□□ 1.8
MSH6P52701 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC26.28■■□□□ 1.8
MSH6P52701 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC26.28■■□□□ 1.8
MSH6P52701 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
MSH6P52701 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH6P52701 AL137060.1-201ENST00000618151 2648 ntBASIC26.28■■□□□ 1.8
MSH6P52701 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC26.28■■□□□ 1.8
MSH6P52701 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC26.27■■□□□ 1.8
MSH6P52701 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
MSH6P52701 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC26.27■■□□□ 1.8
MSH6P52701 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC26.27■■□□□ 1.8
MSH6P52701 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC26.27■■□□□ 1.8
MSH6P52701 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC26.27■■□□□ 1.8
MSH6P52701 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
MSH6P52701 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.8
MSH6P52701 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.8
MSH6P52701 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
MSH6P52701 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
MSH6P52701 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC26.26■■□□□ 1.79
MSH6P52701 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
MSH6P52701 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms