Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 AL031133.1-201ENST00000406807 723 ntBASIC20.9■□□□□ 0.94
CLCN3P51790 KRT18P38-201ENST00000449496 1282 ntBASIC20.9■□□□□ 0.94
CLCN3P51790 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.9■□□□□ 0.94
CLCN3P51790 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLCN3P51790 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.9■□□□□ 0.94
CLCN3P51790 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLCN3P51790 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CLCN3P51790 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.9■□□□□ 0.94
CLCN3P51790 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLCN3P51790 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLCN3P51790 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLCN3P51790 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLCN3P51790 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLCN3P51790 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CLCN3P51790 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.89■□□□□ 0.94
CLCN3P51790 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CLCN3P51790 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.89■□□□□ 0.93
CLCN3P51790 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
CLCN3P51790 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.89■□□□□ 0.93
CLCN3P51790 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.89■□□□□ 0.93
CLCN3P51790 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.89■□□□□ 0.93
CLCN3P51790 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLCN3P51790 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLCN3P51790 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.89■□□□□ 0.93
CLCN3P51790 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC20.89■□□□□ 0.93
CLCN3P51790 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.89■□□□□ 0.93
CLCN3P51790 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
CLCN3P51790 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLCN3P51790 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLCN3P51790 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLCN3P51790 AC036111.1-201ENST00000533973 1582 ntBASIC20.89■□□□□ 0.93
CLCN3P51790 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.88■□□□□ 0.93
CLCN3P51790 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CLCN3P51790 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.88■□□□□ 0.93
CLCN3P51790 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.88■□□□□ 0.93
CLCN3P51790 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.88■□□□□ 0.93
CLCN3P51790 GCSHP2-201ENST00000560971 527 ntBASIC20.88■□□□□ 0.93
CLCN3P51790 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.88■□□□□ 0.93
CLCN3P51790 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC20.88■□□□□ 0.93
CLCN3P51790 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLCN3P51790 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.88■□□□□ 0.93
CLCN3P51790 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.88■□□□□ 0.93
CLCN3P51790 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.87■□□□□ 0.93
CLCN3P51790 KRT8P3-201ENST00000519669 1449 ntBASIC20.87■□□□□ 0.93
CLCN3P51790 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.87■□□□□ 0.93
CLCN3P51790 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.87■□□□□ 0.93
CLCN3P51790 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.87■□□□□ 0.93
CLCN3P51790 HOMER2P1-201ENST00000455653 964 ntBASIC20.87■□□□□ 0.93
CLCN3P51790 CLN6-204ENST00000564752 900 ntTSL 3 BASIC20.87■□□□□ 0.93
CLCN3P51790 NEK4P2-201ENST00000580004 1012 ntBASIC20.87■□□□□ 0.93
CLCN3P51790 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.87■□□□□ 0.93
CLCN3P51790 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CLCN3P51790 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLCN3P51790 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.87■□□□□ 0.93
CLCN3P51790 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CLCN3P51790 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.86■□□□□ 0.93
CLCN3P51790 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.86■□□□□ 0.93
CLCN3P51790 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLCN3P51790 AP000523.1-201ENST00000398242 1049 ntBASIC20.86■□□□□ 0.93
CLCN3P51790 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.86■□□□□ 0.93
CLCN3P51790 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.86■□□□□ 0.93
CLCN3P51790 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC20.86■□□□□ 0.93
CLCN3P51790 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC20.86■□□□□ 0.93
CLCN3P51790 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.86■□□□□ 0.93
CLCN3P51790 AL358472.4-201ENST00000633140 710 ntBASIC20.86■□□□□ 0.93
CLCN3P51790 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.86■□□□□ 0.93
CLCN3P51790 AC007952.6-201ENST00000573168 2673 ntBASIC20.86■□□□□ 0.93
CLCN3P51790 AC003957.1-201ENST00000625108 2673 ntBASIC20.86■□□□□ 0.93
CLCN3P51790 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms