Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXA9P31269 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
HOXA9P31269 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HOXA9P31269 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXA9P31269 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXA9P31269 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXA9P31269 AC011498.5-201ENST00000592027 486 ntBASIC19.78■□□□□ 0.76
HOXA9P31269 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXA9P31269 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.78■□□□□ 0.76
HOXA9P31269 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXA9P31269 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXA9P31269 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA9P31269 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA9P31269 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.77■□□□□ 0.76
HOXA9P31269 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA9P31269 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXA9P31269 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA9P31269 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA9P31269 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXA9P31269 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.77■□□□□ 0.76
HOXA9P31269 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXA9P31269 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXA9P31269 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXA9P31269 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.77■□□□□ 0.76
HOXA9P31269 AL121672.3-201ENST00000608644 468 ntBASIC19.77■□□□□ 0.76
HOXA9P31269 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXA9P31269 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXA9P31269 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
HOXA9P31269 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HOXA9P31269 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXA9P31269 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
HOXA9P31269 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 HLA-F-220ENST00000434407 884 ntBASIC19.76■□□□□ 0.75
HOXA9P31269 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXA9P31269 TSSC2-201ENST00000450217 709 ntBASIC19.76■□□□□ 0.75
HOXA9P31269 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXA9P31269 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.76■□□□□ 0.75
HOXA9P31269 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXA9P31269 AC112497.1-201ENST00000624824 639 ntBASIC19.76■□□□□ 0.75
HOXA9P31269 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXA9P31269 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXA9P31269 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HOXA9P31269 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXA9P31269 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
HOXA9P31269 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXA9P31269 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXA9P31269 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.75■□□□□ 0.75
HOXA9P31269 AC026396.1-201ENST00000419388 421 ntBASIC19.75■□□□□ 0.75
HOXA9P31269 BX276092.5-203ENST00000456199 560 ntBASIC19.75■□□□□ 0.75
HOXA9P31269 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.75■□□□□ 0.75
HOXA9P31269 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 AC092119.3-201ENST00000612618 583 ntBASIC19.75■□□□□ 0.75
HOXA9P31269 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HOXA9P31269 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 KRT8P7-201ENST00000533003 1432 ntBASIC19.75■□□□□ 0.75
HOXA9P31269 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXA9P31269 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXA9P31269 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXA9P31269 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXA9P31269 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXA9P31269 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms