Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CDH3P22223 FITM1-202ENST00000559294 800 ntBASIC18.6■□□□□ 0.57
CDH3P22223 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.6■□□□□ 0.57
CDH3P22223 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.6■□□□□ 0.57
CDH3P22223 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.6■□□□□ 0.57
CDH3P22223 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.6■□□□□ 0.57
CDH3P22223 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDH3P22223 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.59■□□□□ 0.57
CDH3P22223 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CDH3P22223 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CDH3P22223 AC097488.1-201ENST00000507834 756 ntBASIC18.59■□□□□ 0.57
CDH3P22223 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.59■□□□□ 0.57
CDH3P22223 SLC25A1P4-201ENST00000567977 778 ntBASIC18.59■□□□□ 0.57
CDH3P22223 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH3P22223 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH3P22223 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.59■□□□□ 0.57
CDH3P22223 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.59■□□□□ 0.57
CDH3P22223 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDH3P22223 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.58■□□□□ 0.57
CDH3P22223 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH3P22223 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.58■□□□□ 0.57
CDH3P22223 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.58■□□□□ 0.57
CDH3P22223 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CDH3P22223 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.58■□□□□ 0.57
CDH3P22223 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.58■□□□□ 0.57
CDH3P22223 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDH3P22223 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
CDH3P22223 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
CDH3P22223 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 CRYGFP-201ENST00000418459 633 ntBASIC18.58■□□□□ 0.56
CDH3P22223 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH3P22223 FAM207BP-201ENST00000447172 505 ntBASIC18.58■□□□□ 0.56
CDH3P22223 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 Z85996.1-201ENST00000494644 937 ntBASIC18.58■□□□□ 0.56
CDH3P22223 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 AC130371.2-201ENST00000619443 611 ntBASIC18.58■□□□□ 0.56
CDH3P22223 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.58■□□□□ 0.56
CDH3P22223 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.58■□□□□ 0.56
CDH3P22223 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
CDH3P22223 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CDH3P22223 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDH3P22223 KRT8P9-201ENST00000558927 1449 ntBASIC18.57■□□□□ 0.56
CDH3P22223 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH3P22223 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH3P22223 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH3P22223 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CDH3P22223 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH3P22223 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CDH3P22223 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH3P22223 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.57■□□□□ 0.56
CDH3P22223 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CDH3P22223 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.57■□□□□ 0.56
CDH3P22223 NAPSB-206ENST00000562112 1266 ntBASIC18.57■□□□□ 0.56
CDH3P22223 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.57■□□□□ 0.56
CDH3P22223 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.57■□□□□ 0.56
CDH3P22223 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CDH3P22223 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.57■□□□□ 0.56
CDH3P22223 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDH3P22223 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms