Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL4A1P02462 AC016734.2-201ENST00000624325 1377 ntBASIC23.29■■□□□ 1.32
COL4A1P02462 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
COL4A1P02462 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC23.28■■□□□ 1.32
COL4A1P02462 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.28■■□□□ 1.32
COL4A1P02462 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC23.28■■□□□ 1.32
COL4A1P02462 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A1P02462 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A1P02462 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A1P02462 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A1P02462 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 AC246785.2-201ENST00000432512 513 ntBASIC23.28■■□□□ 1.32
COL4A1P02462 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC23.28■■□□□ 1.32
COL4A1P02462 RNF126P1-202ENST00000569893 925 ntBASIC23.28■■□□□ 1.32
COL4A1P02462 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC23.28■■□□□ 1.32
COL4A1P02462 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 IRF5-214ENST00000613821 595 ntTSL 5 BASIC23.28■■□□□ 1.32
COL4A1P02462 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC23.28■■□□□ 1.32
COL4A1P02462 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL4A1P02462 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC23.28■■□□□ 1.32
COL4A1P02462 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A1P02462 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC23.27■■□□□ 1.32
COL4A1P02462 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.27■■□□□ 1.32
COL4A1P02462 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC23.27■■□□□ 1.32
COL4A1P02462 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A1P02462 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
COL4A1P02462 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A1P02462 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC23.27■■□□□ 1.32
COL4A1P02462 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC23.27■■□□□ 1.32
COL4A1P02462 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.27■■□□□ 1.32
COL4A1P02462 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC23.27■■□□□ 1.32
COL4A1P02462 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A1P02462 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL4A1P02462 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
COL4A1P02462 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 AL158211.5-201ENST00000623583 2518 ntBASIC23.26■■□□□ 1.31
COL4A1P02462 AL162741.1-201ENST00000565563 1558 ntBASIC23.26■■□□□ 1.31
COL4A1P02462 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
COL4A1P02462 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 PCDHAC2-203ENST00000615316 3011 ntBASIC23.26■■□□□ 1.31
COL4A1P02462 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL4A1P02462 AC093525.10-201ENST00000625130 1569 ntBASIC23.26■■□□□ 1.31
COL4A1P02462 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.25■■□□□ 1.31
COL4A1P02462 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC23.25■■□□□ 1.31
COL4A1P02462 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC23.25■■□□□ 1.31
COL4A1P02462 RCC2P3-201ENST00000418112 1537 ntBASIC23.25■■□□□ 1.31
COL4A1P02462 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
COL4A1P02462 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
COL4A1P02462 GAD2-202ENST00000376248 680 ntTSL 5 BASIC23.25■■□□□ 1.31
COL4A1P02462 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
COL4A1P02462 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC23.25■■□□□ 1.31
COL4A1P02462 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC23.25■■□□□ 1.31
COL4A1P02462 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC23.25■■□□□ 1.31
COL4A1P02462 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
COL4A1P02462 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 AC008556.1-201ENST00000610908 2040 ntBASIC23.24■■□□□ 1.31
COL4A1P02462 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
COL4A1P02462 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.24■■□□□ 1.31
COL4A1P02462 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
COL4A1P02462 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms