Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
TNFP01375 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.57■□□□□ 0.56
TNFP01375 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TNFP01375 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.57■□□□□ 0.56
TNFP01375 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.57■□□□□ 0.56
TNFP01375 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 MYC-208ENST00000641036 567 ntBASIC18.57■□□□□ 0.56
TNFP01375 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TNFP01375 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.57■□□□□ 0.56
TNFP01375 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.57■□□□□ 0.56
TNFP01375 KRT8P3-201ENST00000519669 1449 ntBASIC18.57■□□□□ 0.56
TNFP01375 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TNFP01375 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.56■□□□□ 0.56
TNFP01375 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TNFP01375 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
TNFP01375 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 AL031133.1-201ENST00000406807 723 ntBASIC18.56■□□□□ 0.56
TNFP01375 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.56■□□□□ 0.56
TNFP01375 AL359075.1-203ENST00000462729 1002 ntBASIC18.56■□□□□ 0.56
TNFP01375 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TNFP01375 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.56■□□□□ 0.56
TNFP01375 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.56■□□□□ 0.56
TNFP01375 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.56■□□□□ 0.56
TNFP01375 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
TNFP01375 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.56■□□□□ 0.56
TNFP01375 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TNFP01375 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.56■□□□□ 0.56
TNFP01375 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
TNFP01375 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
TNFP01375 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.55■□□□□ 0.56
TNFP01375 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
TNFP01375 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.55■□□□□ 0.56
TNFP01375 GPAT2P1-201ENST00000444924 1672 ntBASIC18.55■□□□□ 0.56
TNFP01375 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 AL023284.2-201ENST00000405850 579 ntBASIC18.55■□□□□ 0.56
TNFP01375 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.55■□□□□ 0.56
TNFP01375 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.55■□□□□ 0.56
TNFP01375 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
TNFP01375 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.55■□□□□ 0.56
TNFP01375 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.55■□□□□ 0.56
TNFP01375 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TNFP01375 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
TNFP01375 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TNFP01375 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.54■□□□□ 0.56
TNFP01375 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 MCCD1P1-208ENST00000445732 328 ntBASIC18.54■□□□□ 0.56
TNFP01375 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.54■□□□□ 0.56
TNFP01375 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.54■□□□□ 0.56
TNFP01375 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.54■□□□□ 0.56
TNFP01375 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC18.54■□□□□ 0.56
TNFP01375 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.54■□□□□ 0.56
TNFP01375 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
TNFP01375 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms