Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.74■□□□□ 0.59
SNX3O60493 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SNX3O60493 AC004854.2-201ENST00000608450 1441 ntBASIC18.74■□□□□ 0.59
SNX3O60493 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SNX3O60493 AL645608.8-201ENST00000606034 2086 ntBASIC18.73■□□□□ 0.59
SNX3O60493 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SNX3O60493 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.73■□□□□ 0.59
SNX3O60493 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 TNRC18P3-201ENST00000441896 2691 ntBASIC18.73■□□□□ 0.59
SNX3O60493 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SNX3O60493 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.73■□□□□ 0.59
SNX3O60493 AC096631.2-201ENST00000436136 790 ntBASIC18.73■□□□□ 0.59
SNX3O60493 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.73■□□□□ 0.59
SNX3O60493 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.73■□□□□ 0.59
SNX3O60493 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.73■□□□□ 0.59
SNX3O60493 UBE2DNL-204ENST00000602536 740 ntBASIC18.73■□□□□ 0.59
SNX3O60493 AL031432.3-201ENST00000607698 485 ntBASIC18.73■□□□□ 0.59
SNX3O60493 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.73■□□□□ 0.59
SNX3O60493 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.73■□□□□ 0.59
SNX3O60493 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SNX3O60493 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
SNX3O60493 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 AC135776.1-201ENST00000319817 2481 ntBASIC18.73■□□□□ 0.59
SNX3O60493 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SNX3O60493 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.72■□□□□ 0.59
SNX3O60493 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.72■□□□□ 0.59
SNX3O60493 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SNX3O60493 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SNX3O60493 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.72■□□□□ 0.59
SNX3O60493 MYCNOS-205ENST00000641950 531 ntBASIC18.72■□□□□ 0.59
SNX3O60493 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 AC080080.1-201ENST00000625121 2420 ntBASIC18.72■□□□□ 0.59
SNX3O60493 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SNX3O60493 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX3O60493 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.72■□□□□ 0.59
SNX3O60493 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SNX3O60493 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.71■□□□□ 0.59
SNX3O60493 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.71■□□□□ 0.59
SNX3O60493 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.71■□□□□ 0.59
SNX3O60493 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.71■□□□□ 0.59
SNX3O60493 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC18.71■□□□□ 0.59
SNX3O60493 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.71■□□□□ 0.59
SNX3O60493 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.71■□□□□ 0.59
SNX3O60493 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SNX3O60493 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.71■□□□□ 0.59
SNX3O60493 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
SNX3O60493 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms